miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 14515 0.69 0.489394
Target:  5'- aCGCGcAGCagccauCGCCGAcGcUGCGGGUGGg -3'
miRNA:   3'- -GCGC-UUGcu----GCGGCU-CuACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 18831 0.69 0.479439
Target:  5'- gGCGAAgGG-GCCGGGcGUGCAGG-GGc -3'
miRNA:   3'- gCGCUUgCUgCGGCUC-UACGUCCgCC- -5'
24907 5' -57.2 NC_005284.1 + 51460 0.69 0.459834
Target:  5'- aGCuGAugGACGUCGAGcgaUGGGCGGu -3'
miRNA:   3'- gCG-CUugCUGCGGCUCuacGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 21630 0.7 0.431249
Target:  5'- cCGCGcuCGACGCCGAGcaGCGuGCGa -3'
miRNA:   3'- -GCGCuuGCUGCGGCUCuaCGUcCGCc -5'
24907 5' -57.2 NC_005284.1 + 47307 0.7 0.419189
Target:  5'- aCGCGcGCGA-GCUGAaccgucaacugaucGAUGCGGGCGa -3'
miRNA:   3'- -GCGCuUGCUgCGGCU--------------CUACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 19379 0.7 0.41187
Target:  5'- uGCGaAGCGAuuCGCCGuGAucgacgagggcggUGCAGGCGu -3'
miRNA:   3'- gCGC-UUGCU--GCGGCuCU-------------ACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 23082 0.7 0.394808
Target:  5'- gGCG-GCGACGCUGGuagcauGUGgGGGCGGa -3'
miRNA:   3'- gCGCuUGCUGCGGCUc-----UACgUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 54742 0.7 0.386014
Target:  5'- gGCGGAUG-CGCCGGGuggGgAGGgGGg -3'
miRNA:   3'- gCGCUUGCuGCGGCUCua-CgUCCgCC- -5'
24907 5' -57.2 NC_005284.1 + 18478 0.7 0.386014
Target:  5'- gCGCGggUGcGCGCCGAGAacGCGcucGGCGu -3'
miRNA:   3'- -GCGCuuGC-UGCGGCUCUa-CGU---CCGCc -5'
24907 5' -57.2 NC_005284.1 + 42892 0.71 0.368818
Target:  5'- uCGaUGGACGAUGCCGAGAgGC-GGCa- -3'
miRNA:   3'- -GC-GCUUGCUGCGGCUCUaCGuCCGcc -5'
24907 5' -57.2 NC_005284.1 + 19028 0.71 0.360419
Target:  5'- gGCG-GCGAuCGCCGAGG-GCGauauGGCGGu -3'
miRNA:   3'- gCGCuUGCU-GCGGCUCUaCGU----CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 28616 0.69 0.469584
Target:  5'- gGCGAACG-UGCCGGGuAUGacgugaAGGCGc -3'
miRNA:   3'- gCGCUUGCuGCGGCUC-UACg-----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 45652 0.69 0.469584
Target:  5'- gGCGu-CGAUaGCCGAGugcGCGGGCGa -3'
miRNA:   3'- gCGCuuGCUG-CGGCUCua-CGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 15955 0.69 0.479439
Target:  5'- cCGCcucuGCGGCGaCGAGAcgGCAaGGCGGu -3'
miRNA:   3'- -GCGcu--UGCUGCgGCUCUa-CGU-CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 44524 0.68 0.519812
Target:  5'- uGCGaAGCGGCGUCGAGAU-CAcGCGa -3'
miRNA:   3'- gCGC-UUGCUGCGGCUCUAcGUcCGCc -5'
24907 5' -57.2 NC_005284.1 + 49173 0.67 0.561454
Target:  5'- uCGCGcugcuCGAUGCCGAGuUGCuuaccGCGGu -3'
miRNA:   3'- -GCGCuu---GCUGCGGCUCuACGuc---CGCC- -5'
24907 5' -57.2 NC_005284.1 + 11015 0.67 0.582625
Target:  5'- gGCG-ACGAgGCCGGccAUGCGGGCc- -3'
miRNA:   3'- gCGCuUGCUgCGGCUc-UACGUCCGcc -5'
24907 5' -57.2 NC_005284.1 + 47852 0.67 0.582625
Target:  5'- cCGCGAGCGcCGCCucGAucUGCuuacGCGGa -3'
miRNA:   3'- -GCGCUUGCuGCGGcuCU--ACGuc--CGCC- -5'
24907 5' -57.2 NC_005284.1 + 34039 0.66 0.614655
Target:  5'- cCGC-AGCaGCGCCGGccgacGA-GCGGGCGGc -3'
miRNA:   3'- -GCGcUUGcUGCGGCU-----CUaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 10656 0.7 0.403731
Target:  5'- gCGCGAuuucucguCGACGCCGAGGUucgacGUcuugAGGCGa -3'
miRNA:   3'- -GCGCUu-------GCUGCGGCUCUA-----CG----UCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.