miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 33112 0.67 0.579438
Target:  5'- aGCGGGCGAUGCUGccucUGCgugaacggguugagGGGCGGc -3'
miRNA:   3'- gCGCUUGCUGCGGCucu-ACG--------------UCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 21660 0.67 0.572017
Target:  5'- cCGCGcACGAUGCCGcc--GCGucGGCGGu -3'
miRNA:   3'- -GCGCuUGCUGCGGCucuaCGU--CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 49173 0.67 0.561454
Target:  5'- uCGCGcugcuCGAUGCCGAGuUGCuuaccGCGGu -3'
miRNA:   3'- -GCGCuu---GCUGCGGCUCuACGuc---CGCC- -5'
24907 5' -57.2 NC_005284.1 + 34522 0.67 0.561454
Target:  5'- uCGUG-GCGAUGCCGu--UGCGGGUGu -3'
miRNA:   3'- -GCGCuUGCUGCGGCucuACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 22217 0.67 0.560401
Target:  5'- cCGCGcuuuccgaagcacGACuguuACGUCGAGGUguucGCGGGCGGg -3'
miRNA:   3'- -GCGC-------------UUGc---UGCGGCUCUA----CGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 38095 0.68 0.549898
Target:  5'- gCGCGGACGAagaCG-CGAGGucagaguaccuacUGgAGGCGGa -3'
miRNA:   3'- -GCGCUUGCU---GCgGCUCU-------------ACgUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 7706 0.68 0.540498
Target:  5'- gCGUGAGCGguGCGCCGAagcucGUGCcgccgccGGCGGc -3'
miRNA:   3'- -GCGCUUGC--UGCGGCUc----UACGu------CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 23452 0.68 0.530119
Target:  5'- gGCuacauCGACacacCCGAGAaGCAGGCGGc -3'
miRNA:   3'- gCGcuu--GCUGc---GGCUCUaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 48499 0.68 0.530119
Target:  5'- uCGUGAGCGA-GUCGAaggGCGGGCGu -3'
miRNA:   3'- -GCGCUUGCUgCGGCUcuaCGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 15724 0.68 0.530119
Target:  5'- gGCGucuguCGACGCgCGcGGUGUgGGGCGGa -3'
miRNA:   3'- gCGCuu---GCUGCG-GCuCUACG-UCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 44524 0.68 0.519812
Target:  5'- uGCGaAGCGGCGUCGAGAU-CAcGCGa -3'
miRNA:   3'- gCGC-UUGCUGCGGCUCUAcGUcCGCc -5'
24907 5' -57.2 NC_005284.1 + 938 0.68 0.519812
Target:  5'- uGCuGGACGACgaguucgguGCCGAGGUGUAcgccGGCGc -3'
miRNA:   3'- gCG-CUUGCUG---------CGGCUCUACGU----CCGCc -5'
24907 5' -57.2 NC_005284.1 + 30421 0.69 0.489394
Target:  5'- cCGCGugcGCGACGgCGAGGUGCuguuucGCGa -3'
miRNA:   3'- -GCGCu--UGCUGCgGCUCUACGuc----CGCc -5'
24907 5' -57.2 NC_005284.1 + 14515 0.69 0.489394
Target:  5'- aCGCGcAGCagccauCGCCGAcGcUGCGGGUGGg -3'
miRNA:   3'- -GCGC-UUGcu----GCGGCU-CuACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 18831 0.69 0.479439
Target:  5'- gGCGAAgGG-GCCGGGcGUGCAGG-GGc -3'
miRNA:   3'- gCGCUUgCUgCGGCUC-UACGUCCgCC- -5'
24907 5' -57.2 NC_005284.1 + 15955 0.69 0.479439
Target:  5'- cCGCcucuGCGGCGaCGAGAcgGCAaGGCGGu -3'
miRNA:   3'- -GCGcu--UGCUGCgGCUCUa-CGU-CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 45652 0.69 0.469584
Target:  5'- gGCGu-CGAUaGCCGAGugcGCGGGCGa -3'
miRNA:   3'- gCGCuuGCUG-CGGCUCua-CGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 28616 0.69 0.469584
Target:  5'- gGCGAACG-UGCCGGGuAUGacgugaAGGCGc -3'
miRNA:   3'- gCGCUUGCuGCGGCUC-UACg-----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 51460 0.69 0.459834
Target:  5'- aGCuGAugGACGUCGAGcgaUGGGCGGu -3'
miRNA:   3'- gCG-CUugCUGCGGCUCuacGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 9979 0.69 0.459834
Target:  5'- gCGCGAGCGACGCUucggcgcgcuGAGcuccUGCuGuGCGGc -3'
miRNA:   3'- -GCGCUUGCUGCGG----------CUCu---ACGuC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.