Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24909 | 3' | -54.2 | NC_005284.1 | + | 181 | 0.66 | 0.766807 |
Target: 5'- cCGCcgGACUGgAUUGUCGgcGAGGCGCg -3' miRNA: 3'- -GUG--UUGGCgUAGCAGCacUUCCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 385 | 0.66 | 0.766807 |
Target: 5'- -cCAGCUGCGacCGUUGUGAAggaagcggcGGCGCa -3' miRNA: 3'- guGUUGGCGUa-GCAGCACUU---------CCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 5380 | 0.66 | 0.787025 |
Target: 5'- uCugAGCCGcCAUCGa---GAAGGCGCc -3' miRNA: 3'- -GugUUGGC-GUAGCagcaCUUCCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 6966 | 0.69 | 0.581492 |
Target: 5'- gGC-GCCGUAuuUCGUCGUGAccgcguacauGGCGCg -3' miRNA: 3'- gUGuUGGCGU--AGCAGCACUu---------CCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 8102 | 0.67 | 0.692211 |
Target: 5'- uGCAACCGCG--GUCGcGgcGGCGUUc -3' miRNA: 3'- gUGUUGGCGUagCAGCaCuuCCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 8135 | 1.07 | 0.001777 |
Target: 5'- gCACAACCGCAUCGUCGUGAAGGCGCUc -3' miRNA: 3'- -GUGUUGGCGUAGCAGCACUUCCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 9080 | 0.66 | 0.786029 |
Target: 5'- aCGCGACCGCcuugcugAUCGUgGUGAcaagcGGGC-Cg -3' miRNA: 3'- -GUGUUGGCG-------UAGCAgCACU-----UCCGcGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 11276 | 0.67 | 0.713995 |
Target: 5'- gGCGACCGUcUCGUC--GAAGGCuuGCUu -3' miRNA: 3'- gUGUUGGCGuAGCAGcaCUUCCG--CGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 11343 | 0.68 | 0.659121 |
Target: 5'- gCGCAACUGCG-CGUCGaGgcGGuCGCa -3' miRNA: 3'- -GUGUUGGCGUaGCAGCaCuuCC-GCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 13689 | 0.66 | 0.770898 |
Target: 5'- aCAC-ACCGCAguaCGUCGggacGAagaagacguuuacgcAGGCGCa -3' miRNA: 3'- -GUGuUGGCGUa--GCAGCa---CU---------------UCCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 15297 | 0.68 | 0.659121 |
Target: 5'- gAgGACCGCA-CGaUGUGcGGGCGCa -3' miRNA: 3'- gUgUUGGCGUaGCaGCACuUCCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 16763 | 0.7 | 0.548678 |
Target: 5'- gCGCGugCGCuUCGgUGUGccGGCGCUa -3' miRNA: 3'- -GUGUugGCGuAGCaGCACuuCCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 18764 | 0.67 | 0.703138 |
Target: 5'- -uUggUCGCGUCGUCGcGAuucGGCGUg -3' miRNA: 3'- guGuuGGCGUAGCAGCaCUu--CCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 19344 | 0.73 | 0.378732 |
Target: 5'- gACAACgGCAUCGUCGaaucGcAGGUGCUu -3' miRNA: 3'- gUGUUGgCGUAGCAGCa---CuUCCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 21955 | 0.66 | 0.746023 |
Target: 5'- cCGCAACCGCugCGUCGacgucUGAuAGGCGg- -3' miRNA: 3'- -GUGUUGGCGuaGCAGC-----ACU-UCCGCga -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 22982 | 0.67 | 0.721546 |
Target: 5'- gGCugcGCCGCAUCGUCccaacUGAAaaugaucagcucgcGGCGCUc -3' miRNA: 3'- gUGu--UGGCGUAGCAGc----ACUU--------------CCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 23792 | 0.69 | 0.599165 |
Target: 5'- -uUAGCCGCAUCGUCGauccgcucgUGAucaauuaccauacGGCGCUc -3' miRNA: 3'- guGUUGGCGUAGCAGC---------ACUu------------CCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 25528 | 0.66 | 0.787025 |
Target: 5'- aGCGGCCGU--CGUCGUGc--GCGCg -3' miRNA: 3'- gUGUUGGCGuaGCAGCACuucCGCGa -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 28612 | 0.68 | 0.636914 |
Target: 5'- aACGuGCCGgGUaUGaCGUGAAGGCGCUc -3' miRNA: 3'- gUGU-UGGCgUA-GCaGCACUUCCGCGA- -5' |
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24909 | 3' | -54.2 | NC_005284.1 | + | 33359 | 0.68 | 0.659121 |
Target: 5'- aACGacACCGCccguUCGUCG-GccGGCGCUg -3' miRNA: 3'- gUGU--UGGCGu---AGCAGCaCuuCCGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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