miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24909 5' -54.9 NC_005284.1 + 7113 0.66 0.780672
Target:  5'- --cGUgCGAUGUCGGuucaggaucgguuCUCGGUCGGAGg -3'
miRNA:   3'- guuCGaGCUGCAGCU-------------GGGCCAGCUUC- -5'
24909 5' -54.9 NC_005284.1 + 16504 0.66 0.771735
Target:  5'- --uGCUCGACGU-GAUCuCGG-CGggGc -3'
miRNA:   3'- guuCGAGCUGCAgCUGG-GCCaGCuuC- -5'
24909 5' -54.9 NC_005284.1 + 16821 0.66 0.745303
Target:  5'- aCGGGCUaucGCGUCGACUaugcgaucgacuuguCGGUCGAc- -3'
miRNA:   3'- -GUUCGAgc-UGCAGCUGG---------------GCCAGCUuc -5'
24909 5' -54.9 NC_005284.1 + 50591 0.67 0.730743
Target:  5'- --uGCuUCGGCGUgcCGACCCGGUucUGAu- -3'
miRNA:   3'- guuCG-AGCUGCA--GCUGGGCCA--GCUuc -5'
24909 5' -54.9 NC_005284.1 + 15493 0.67 0.720225
Target:  5'- cCGAGCgCGGCGUCGcguuACCCGacuUCGAGc -3'
miRNA:   3'- -GUUCGaGCUGCAGC----UGGGCc--AGCUUc -5'
24909 5' -54.9 NC_005284.1 + 12293 0.67 0.720225
Target:  5'- --cGCUCGugGaCGuGCCCGGUCc--- -3'
miRNA:   3'- guuCGAGCugCaGC-UGGGCCAGcuuc -5'
24909 5' -54.9 NC_005284.1 + 20119 0.67 0.698942
Target:  5'- -uAGUUCGGCGUCGAaCC-GUCGAu- -3'
miRNA:   3'- guUCGAGCUGCAGCUgGGcCAGCUuc -5'
24909 5' -54.9 NC_005284.1 + 1985 0.67 0.677405
Target:  5'- aCAGGUUCGuuGCG-CGugCgGGUCGAGc -3'
miRNA:   3'- -GUUCGAGC--UGCaGCugGgCCAGCUUc -5'
24909 5' -54.9 NC_005284.1 + 424 0.68 0.633907
Target:  5'- gCGAGuUUCGGCGcaaugcuggggcUCGACCCGG-CGAGc -3'
miRNA:   3'- -GUUC-GAGCUGC------------AGCUGGGCCaGCUUc -5'
24909 5' -54.9 NC_005284.1 + 18732 0.69 0.612109
Target:  5'- gCAGGCgUCGACGUCGuaucaggggcuCgCGGUCGGGc -3'
miRNA:   3'- -GUUCG-AGCUGCAGCu----------GgGCCAGCUUc -5'
24909 5' -54.9 NC_005284.1 + 39896 0.69 0.601231
Target:  5'- cCAuGCaaugCGGCacgCGGCCCGGUUGAAGc -3'
miRNA:   3'- -GUuCGa---GCUGca-GCUGGGCCAGCUUC- -5'
24909 5' -54.9 NC_005284.1 + 21702 0.69 0.579561
Target:  5'- --uGCUCGGCGUCGAgCgCGGcgcgCGAGa -3'
miRNA:   3'- guuCGAGCUGCAGCUgG-GCCa---GCUUc -5'
24909 5' -54.9 NC_005284.1 + 51080 0.7 0.505449
Target:  5'- uCGAGCUCGACGaCGGCCaaaUCGAAa -3'
miRNA:   3'- -GUUCGAGCUGCaGCUGGgccAGCUUc -5'
24909 5' -54.9 NC_005284.1 + 7484 0.71 0.495174
Target:  5'- cCGAGCUCGGCuugccCGAUCCGGgCGAAu -3'
miRNA:   3'- -GUUCGAGCUGca---GCUGGGCCaGCUUc -5'
24909 5' -54.9 NC_005284.1 + 42188 0.71 0.445333
Target:  5'- -cGGaCUCGGucUCGGCCCGGUCGGGa -3'
miRNA:   3'- guUC-GAGCUgcAGCUGGGCCAGCUUc -5'
24909 5' -54.9 NC_005284.1 + 38753 0.72 0.434747
Target:  5'- uGAGCUCGauuGCGUCGAggcaaugUCCGG-CGAAGu -3'
miRNA:   3'- gUUCGAGC---UGCAGCU-------GGGCCaGCUUC- -5'
24909 5' -54.9 NC_005284.1 + 18044 0.72 0.426194
Target:  5'- cCGAGCgcuUCGACGcCGAUCCGGUgGcGGg -3'
miRNA:   3'- -GUUCG---AGCUGCaGCUGGGCCAgCuUC- -5'
24909 5' -54.9 NC_005284.1 + 47481 0.73 0.371843
Target:  5'- gCAuGCUCGACGUCGGCCacacCGAGGa -3'
miRNA:   3'- -GUuCGAGCUGCAGCUGGgccaGCUUC- -5'
24909 5' -54.9 NC_005284.1 + 26031 0.77 0.204102
Target:  5'- gGGGCUCGAUGUCGGcgacCCCGGaUCGAc- -3'
miRNA:   3'- gUUCGAGCUGCAGCU----GGGCC-AGCUuc -5'
24909 5' -54.9 NC_005284.1 + 14433 0.83 0.082257
Target:  5'- aAAGCUCGAUcaGUCGACCCGGcUCGAGc -3'
miRNA:   3'- gUUCGAGCUG--CAGCUGGGCC-AGCUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.