miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24910 5' -53.7 NC_005284.1 + 9950 0.66 0.819375
Target:  5'- ---cCUGCuGUGCGGCugccgucucgcgagcGAUGAUCGCc- -3'
miRNA:   3'- ccuaGACG-UACGCCG---------------CUACUAGCGcc -5'
24910 5' -53.7 NC_005284.1 + 12053 0.66 0.815655
Target:  5'- cGGuuuUCggcGCGUGCGGCGAUG-UCucaGGu -3'
miRNA:   3'- -CCu--AGa--CGUACGCCGCUACuAGcg-CC- -5'
24910 5' -53.7 NC_005284.1 + 10103 0.66 0.815655
Target:  5'- cGGGUCUGaagaCGGCGAccGAaagCGCGGc -3'
miRNA:   3'- -CCUAGACguacGCCGCUa-CUa--GCGCC- -5'
24910 5' -53.7 NC_005284.1 + 43941 0.66 0.806222
Target:  5'- uGAUgCUGC--GCGGCGAcGAgagcUUGCGGg -3'
miRNA:   3'- cCUA-GACGuaCGCCGCUaCU----AGCGCC- -5'
24910 5' -53.7 NC_005284.1 + 33148 0.67 0.783849
Target:  5'- aGAUCacgaaUGCGUGUacgagaacGGCGAUGGUgugugccgccagugCGCGGa -3'
miRNA:   3'- cCUAG-----ACGUACG--------CCGCUACUA--------------GCGCC- -5'
24910 5' -53.7 NC_005284.1 + 6859 0.67 0.776868
Target:  5'- cGAUCgugUGCucggaggGCGGCGGUGAgCGUGa -3'
miRNA:   3'- cCUAG---ACGua-----CGCCGCUACUaGCGCc -5'
24910 5' -53.7 NC_005284.1 + 2344 0.67 0.776868
Target:  5'- uGGUCcGCGUGgGGCGGUauggGGUCaucgaGCGGa -3'
miRNA:   3'- cCUAGaCGUACgCCGCUA----CUAG-----CGCC- -5'
24910 5' -53.7 NC_005284.1 + 12786 0.67 0.766768
Target:  5'- cGAUCgGCAUGCGGgCGcgGAgUCGUu- -3'
miRNA:   3'- cCUAGaCGUACGCC-GCuaCU-AGCGcc -5'
24910 5' -53.7 NC_005284.1 + 48508 0.67 0.766768
Target:  5'- ---aCUGCAcGCGGCGAUuGG-CGCGu -3'
miRNA:   3'- ccuaGACGUaCGCCGCUA-CUaGCGCc -5'
24910 5' -53.7 NC_005284.1 + 5248 0.67 0.75653
Target:  5'- uGGaAUCUGCcgGUcguugaaacgcaGGCGAUGAcUGCGa -3'
miRNA:   3'- -CC-UAGACGuaCG------------CCGCUACUaGCGCc -5'
24910 5' -53.7 NC_005284.1 + 32787 0.67 0.755499
Target:  5'- --cUCUGCcgGUGCGucggccuGCGcgGGUUGCGGg -3'
miRNA:   3'- ccuAGACG--UACGC-------CGCuaCUAGCGCC- -5'
24910 5' -53.7 NC_005284.1 + 19017 0.67 0.746163
Target:  5'- uGGucgCUGCAgGCGGCGAUcgccgagggcGAUaugGCGGu -3'
miRNA:   3'- -CCua-GACGUaCGCCGCUA----------CUAg--CGCC- -5'
24910 5' -53.7 NC_005284.1 + 18020 0.67 0.735682
Target:  5'- cGAUC-GCcgGCGGCGAUuGUCgGCGc -3'
miRNA:   3'- cCUAGaCGuaCGCCGCUAcUAG-CGCc -5'
24910 5' -53.7 NC_005284.1 + 13384 0.68 0.703656
Target:  5'- cGAUCUGUcUGCGGCGGUucaaaGCGa -3'
miRNA:   3'- cCUAGACGuACGCCGCUAcuag-CGCc -5'
24910 5' -53.7 NC_005284.1 + 2411 0.68 0.681937
Target:  5'- -uAUCUGCgGUGUGGuCGuguguccgucUGAUCGCGGa -3'
miRNA:   3'- ccUAGACG-UACGCC-GCu---------ACUAGCGCC- -5'
24910 5' -53.7 NC_005284.1 + 51466 0.69 0.626993
Target:  5'- uGGAcgUCgaGCgAUG-GGCGGUGAUCGCGc -3'
miRNA:   3'- -CCU--AGa-CG-UACgCCGCUACUAGCGCc -5'
24910 5' -53.7 NC_005284.1 + 40479 0.7 0.572147
Target:  5'- -----cGCGUGUGGCGAaGA-CGCGGa -3'
miRNA:   3'- ccuagaCGUACGCCGCUaCUaGCGCC- -5'
24910 5' -53.7 NC_005284.1 + 27485 0.72 0.497607
Target:  5'- cGGAcuaUCuUGCGcccacgGUGGCGAUGAUCGaUGGg -3'
miRNA:   3'- -CCU---AG-ACGUa-----CGCCGCUACUAGC-GCC- -5'
24910 5' -53.7 NC_005284.1 + 8358 1.13 0.000945
Target:  5'- cGGAUCUGCAUGCGGCGAUGAUCGCGGc -3'
miRNA:   3'- -CCUAGACGUACGCCGCUACUAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.