miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24912 3' -59.1 NC_005284.1 + 16776 0.65 0.558304
Target:  5'- gCGCGUcggacgucaGCGGCACGCcgacgccGGCcuCaCGCUCGa -3'
miRNA:   3'- -GCGCG---------CGCUGUGUG-------CCGuuG-GCGAGC- -5'
24912 3' -59.1 NC_005284.1 + 21992 0.66 0.548925
Target:  5'- uCGCGCugaucgucgccgGCGACGC-CGaaaacgcguuccGCAACCGCUgCGu -3'
miRNA:   3'- -GCGCG------------CGCUGUGuGC------------CGUUGGCGA-GC- -5'
24912 3' -59.1 NC_005284.1 + 30292 0.66 0.548925
Target:  5'- -uCGCGCGAUACGguugaggcCGGCua-UGCUCGa -3'
miRNA:   3'- gcGCGCGCUGUGU--------GCCGuugGCGAGC- -5'
24912 3' -59.1 NC_005284.1 + 48503 0.66 0.547886
Target:  5'- aCGCG-GCGAUugGCGcgucuucGCAGCCaacuuuucgacGCUCGg -3'
miRNA:   3'- -GCGCgCGCUGugUGC-------CGUUGG-----------CGAGC- -5'
24912 3' -59.1 NC_005284.1 + 12048 0.66 0.538562
Target:  5'- uCGCGCGguuuuCGGCGCguGCGGCGAUgucucaggUGUUCGg -3'
miRNA:   3'- -GCGCGC-----GCUGUG--UGCCGUUG--------GCGAGC- -5'
24912 3' -59.1 NC_005284.1 + 45445 0.66 0.538562
Target:  5'- gGCGuCGCGAUuguCG-GGCGACCaguuGCUCGc -3'
miRNA:   3'- gCGC-GCGCUGu--GUgCCGUUGG----CGAGC- -5'
24912 3' -59.1 NC_005284.1 + 31440 0.66 0.538562
Target:  5'- uGCGCcgcuGCGGCGCGCcgGGCccccaauuGACCGC-CGu -3'
miRNA:   3'- gCGCG----CGCUGUGUG--CCG--------UUGGCGaGC- -5'
24912 3' -59.1 NC_005284.1 + 21347 0.66 0.538562
Target:  5'- gGCGCGCGGCcCGauguuguaGGCGAa-GCUCa -3'
miRNA:   3'- gCGCGCGCUGuGUg-------CCGUUggCGAGc -5'
24912 3' -59.1 NC_005284.1 + 15472 0.66 0.535465
Target:  5'- uCGUGCGCGACugguaucucgccgaGCGCGGCGuCgCGUUa- -3'
miRNA:   3'- -GCGCGCGCUG--------------UGUGCCGUuG-GCGAgc -5'
24912 3' -59.1 NC_005284.1 + 23300 0.66 0.528266
Target:  5'- uGCGUGCucgACACGGCuccACCGCcCGu -3'
miRNA:   3'- gCGCGCGcugUGUGCCGu--UGGCGaGC- -5'
24912 3' -59.1 NC_005284.1 + 11168 0.66 0.528266
Target:  5'- aGCuCGCG-C-CGCGGCcGCCGCgcgCGg -3'
miRNA:   3'- gCGcGCGCuGuGUGCCGuUGGCGa--GC- -5'
24912 3' -59.1 NC_005284.1 + 32866 0.66 0.518044
Target:  5'- cCGCGCaggcCGACGCAcCGGCAGaggCGCgCGa -3'
miRNA:   3'- -GCGCGc---GCUGUGU-GCCGUUg--GCGaGC- -5'
24912 3' -59.1 NC_005284.1 + 39696 0.66 0.518044
Target:  5'- aGCGCGCcgcgaGGCAgACGGC-GCaGUUCGa -3'
miRNA:   3'- gCGCGCG-----CUGUgUGCCGuUGgCGAGC- -5'
24912 3' -59.1 NC_005284.1 + 31511 0.66 0.518044
Target:  5'- gCGCGCcgcaGCGGCGCACGuCGcCCGCg-- -3'
miRNA:   3'- -GCGCG----CGCUGUGUGCcGUuGGCGagc -5'
24912 3' -59.1 NC_005284.1 + 9980 0.66 0.518044
Target:  5'- aGCGCgaGCGACGCuuCGGCGcGCUgaGCUCc -3'
miRNA:   3'- gCGCG--CGCUGUGu-GCCGU-UGG--CGAGc -5'
24912 3' -59.1 NC_005284.1 + 8903 0.66 0.518044
Target:  5'- -aCGCGUGACGauccgaaGGCGAUUGCUCa -3'
miRNA:   3'- gcGCGCGCUGUgug----CCGUUGGCGAGc -5'
24912 3' -59.1 NC_005284.1 + 11932 0.66 0.507902
Target:  5'- aCGCGCcaguCGGCcugcaACGCGaGCcGCUGCUCGa -3'
miRNA:   3'- -GCGCGc---GCUG-----UGUGC-CGuUGGCGAGC- -5'
24912 3' -59.1 NC_005284.1 + 11739 0.66 0.507902
Target:  5'- gGCGCGCGAaaggACGGCA--CGCUgGg -3'
miRNA:   3'- gCGCGCGCUgug-UGCCGUugGCGAgC- -5'
24912 3' -59.1 NC_005284.1 + 48956 0.66 0.507902
Target:  5'- cCGgGCGUGuC-CACGGCGccgacuucuccGCCGCUUu -3'
miRNA:   3'- -GCgCGCGCuGuGUGCCGU-----------UGGCGAGc -5'
24912 3' -59.1 NC_005284.1 + 18001 0.66 0.506892
Target:  5'- gCGCGCGCagucaagucggucGACggcgACACGGUca-CGCUCGc -3'
miRNA:   3'- -GCGCGCG-------------CUG----UGUGCCGuugGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.