miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24913 3' -48.3 NC_005284.1 + 16062 0.66 0.977065
Target:  5'- --cGUCGGCAguAAGCGCGg---GgGGCu -3'
miRNA:   3'- ugcUAGCUGU--UUCGCGCaauaUgCCG- -5'
24913 3' -48.3 NC_005284.1 + 18119 0.66 0.977065
Target:  5'- -gGAUCGGCGucgAAGCGCu-----CGGCg -3'
miRNA:   3'- ugCUAGCUGU---UUCGCGcaauauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 33862 0.66 0.974242
Target:  5'- cGCGAUCGACuacGAAGUcgGCGc----CGGCg -3'
miRNA:   3'- -UGCUAGCUG---UUUCG--CGCaauauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 29173 0.66 0.974242
Target:  5'- uGCG-UCGACAAGGggaaGCGggAUACGa- -3'
miRNA:   3'- -UGCuAGCUGUUUCg---CGCaaUAUGCcg -5'
24913 3' -48.3 NC_005284.1 + 16180 0.66 0.974242
Target:  5'- gGCGcGUCGAU--GGCGCugg--GCGGCa -3'
miRNA:   3'- -UGC-UAGCUGuuUCGCGcaauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 54466 0.67 0.971175
Target:  5'- cGCGGUgcgCGGCAAucgucauGCGCGaggAUACGGa -3'
miRNA:   3'- -UGCUA---GCUGUUu------CGCGCaa-UAUGCCg -5'
24913 3' -48.3 NC_005284.1 + 45618 0.67 0.971175
Target:  5'- cGCGG-CGGCAuaGAGCGCGgagcAUGCGuuacGCg -3'
miRNA:   3'- -UGCUaGCUGU--UUCGCGCaa--UAUGC----CG- -5'
24913 3' -48.3 NC_005284.1 + 7073 0.67 0.971175
Target:  5'- gGCGAgCGcCAugucGAGCGCGccaUGUACGcGCg -3'
miRNA:   3'- -UGCUaGCuGU----UUCGCGCa--AUAUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 48977 0.67 0.971175
Target:  5'- gGCGcagCGACAccuucgccgccGGGCGUGUcc-ACGGCg -3'
miRNA:   3'- -UGCua-GCUGU-----------UUCGCGCAauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 11338 0.67 0.967855
Target:  5'- -gGAUCGcGCAAcuGCGCGUcgagGCGGUc -3'
miRNA:   3'- ugCUAGC-UGUUu-CGCGCAaua-UGCCG- -5'
24913 3' -48.3 NC_005284.1 + 11478 0.67 0.967855
Target:  5'- cGCGAUCagcaGGCGAuuCGCGggaUGUACGaGCa -3'
miRNA:   3'- -UGCUAG----CUGUUucGCGCa--AUAUGC-CG- -5'
24913 3' -48.3 NC_005284.1 + 7689 0.67 0.967855
Target:  5'- gGCGA-CGuACAGcguGCGCGUga-GCGGUg -3'
miRNA:   3'- -UGCUaGC-UGUUu--CGCGCAauaUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 7543 0.67 0.966808
Target:  5'- gACGAagGGCAAAacauucugcgugccGCGCGUgcgACGGg -3'
miRNA:   3'- -UGCUagCUGUUU--------------CGCGCAauaUGCCg -5'
24913 3' -48.3 NC_005284.1 + 6920 0.67 0.964272
Target:  5'- cACGAUCGAUcgcGCGCGccaacuCGGUg -3'
miRNA:   3'- -UGCUAGCUGuuuCGCGCaauau-GCCG- -5'
24913 3' -48.3 NC_005284.1 + 39020 0.67 0.964272
Target:  5'- -aGGUCGACGAAGUGCucgccgaACGGg -3'
miRNA:   3'- ugCUAGCUGUUUCGCGcaaua--UGCCg -5'
24913 3' -48.3 NC_005284.1 + 1628 0.67 0.964272
Target:  5'- cGCGcUCGACAuGGCGCGcaagcucgauUUgaacaGUAUGGCc -3'
miRNA:   3'- -UGCuAGCUGUuUCGCGC----------AA-----UAUGCCG- -5'
24913 3' -48.3 NC_005284.1 + 12147 0.67 0.964272
Target:  5'- gUGGUgCGGC-AAGCGCGgcuguCGGCu -3'
miRNA:   3'- uGCUA-GCUGuUUCGCGCaauauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 12640 0.67 0.963899
Target:  5'- gGCGAUaCGACGcuGCGUGUgcgcaaagcccaguuCGGCg -3'
miRNA:   3'- -UGCUA-GCUGUuuCGCGCAauau-----------GCCG- -5'
24913 3' -48.3 NC_005284.1 + 35919 0.67 0.963145
Target:  5'- -aGAUCGaucaaaaagaccuaGCAAGGCGCuGUUuguCGGCc -3'
miRNA:   3'- ugCUAGC--------------UGUUUCGCG-CAAuauGCCG- -5'
24913 3' -48.3 NC_005284.1 + 43113 0.67 0.960419
Target:  5'- uACGAgCGACcuuGCGCG--GUGCGGg -3'
miRNA:   3'- -UGCUaGCUGuuuCGCGCaaUAUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.