miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24914 5' -43.5 NC_005284.1 + 19265 0.66 0.999832
Target:  5'- gGCgUCGuAUCAGAUCAaggugcagacgaccgUCGACGGAc--- -3'
miRNA:   3'- -CG-AGC-UAGUCUAGU---------------AGCUGUUUauag -5'
24914 5' -43.5 NC_005284.1 + 5970 0.66 0.999812
Target:  5'- cGC-CGAUCcGAUCGUCG-CGAcgAUg -3'
miRNA:   3'- -CGaGCUAGuCUAGUAGCuGUUuaUAg -5'
24914 5' -43.5 NC_005284.1 + 43276 0.66 0.999812
Target:  5'- aGCUCGAggAGGUCGcgGACGGccugcuGUAUCg -3'
miRNA:   3'- -CGAGCUagUCUAGUagCUGUU------UAUAG- -5'
24914 5' -43.5 NC_005284.1 + 46528 0.66 0.999753
Target:  5'- cGCUCGG-CGGcauUCggCGACGGcgAUCg -3'
miRNA:   3'- -CGAGCUaGUCu--AGuaGCUGUUuaUAG- -5'
24914 5' -43.5 NC_005284.1 + 23834 0.66 0.999753
Target:  5'- cGCUCGAUac---UAUCGACAAGUGc- -3'
miRNA:   3'- -CGAGCUAgucuaGUAGCUGUUUAUag -5'
24914 5' -43.5 NC_005284.1 + 25336 0.66 0.999678
Target:  5'- cGCUCGGagCGGAcuuUCAUUGGCGuc-AUCg -3'
miRNA:   3'- -CGAGCUa-GUCU---AGUAGCUGUuuaUAG- -5'
24914 5' -43.5 NC_005284.1 + 16013 0.67 0.999583
Target:  5'- aGCUCGAgcaUCcGGUCGggcgCGACGAG-AUCc -3'
miRNA:   3'- -CGAGCU---AGuCUAGUa---GCUGUUUaUAG- -5'
24914 5' -43.5 NC_005284.1 + 21000 0.67 0.999465
Target:  5'- aGCUCGAUCuGcUC-UCGACGAuccuuacGUCg -3'
miRNA:   3'- -CGAGCUAGuCuAGuAGCUGUUua-----UAG- -5'
24914 5' -43.5 NC_005284.1 + 14908 0.67 0.99914
Target:  5'- cGCUCGAUCggugcagcaaaaAGAUCAgCGguuGCGAAcGUCg -3'
miRNA:   3'- -CGAGCUAG------------UCUAGUaGC---UGUUUaUAG- -5'
24914 5' -43.5 NC_005284.1 + 14431 0.68 0.998343
Target:  5'- aGCUCGAUCAG-UCGaccCGGCucgagcuguuGGAUGUCc -3'
miRNA:   3'- -CGAGCUAGUCuAGUa--GCUG----------UUUAUAG- -5'
24914 5' -43.5 NC_005284.1 + 3764 0.69 0.996995
Target:  5'- cGC-CGAUCGGAUCAUgGGCcGGccUCa -3'
miRNA:   3'- -CGaGCUAGUCUAGUAgCUGuUUauAG- -5'
24914 5' -43.5 NC_005284.1 + 19485 0.7 0.992698
Target:  5'- gGCUgGAUCAcgaacgcGAUgAUCGGCAAcuAUAUCc -3'
miRNA:   3'- -CGAgCUAGU-------CUAgUAGCUGUU--UAUAG- -5'
24914 5' -43.5 NC_005284.1 + 11119 0.7 0.991584
Target:  5'- aGCUCGcgcGUCAGAUUGUCGAUg------ -3'
miRNA:   3'- -CGAGC---UAGUCUAGUAGCUGuuuauag -5'
24914 5' -43.5 NC_005284.1 + 7138 0.74 0.946761
Target:  5'- uCUCGGUCGGAggUGUCGACGAGUu-- -3'
miRNA:   3'- cGAGCUAGUCUa-GUAGCUGUUUAuag -5'
24914 5' -43.5 NC_005284.1 + 15369 0.75 0.903257
Target:  5'- gGCUCGAUCGG--CAUCGACGAc---- -3'
miRNA:   3'- -CGAGCUAGUCuaGUAGCUGUUuauag -5'
24914 5' -43.5 NC_005284.1 + 53675 0.76 0.871358
Target:  5'- aCUCGAUCAaGUCGUCGACGGGc--- -3'
miRNA:   3'- cGAGCUAGUcUAGUAGCUGUUUauag -5'
24914 5' -43.5 NC_005284.1 + 5920 0.84 0.503906
Target:  5'- uCUUGAUCAGAUCGUCGGCAAc---- -3'
miRNA:   3'- cGAGCUAGUCUAGUAGCUGUUuauag -5'
24914 5' -43.5 NC_005284.1 + 10328 1.16 0.007116
Target:  5'- cGCUCGAUCAGAUCAUCGACAAAUAUCg -3'
miRNA:   3'- -CGAGCUAGUCUAGUAGCUGUUUAUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.