Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24914 | 5' | -43.5 | NC_005284.1 | + | 5970 | 0.66 | 0.999812 |
Target: 5'- cGC-CGAUCcGAUCGUCG-CGAcgAUg -3' miRNA: 3'- -CGaGCUAGuCUAGUAGCuGUUuaUAg -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 25336 | 0.66 | 0.999678 |
Target: 5'- cGCUCGGagCGGAcuuUCAUUGGCGuc-AUCg -3' miRNA: 3'- -CGAGCUa-GUCU---AGUAGCUGUuuaUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 46528 | 0.66 | 0.999753 |
Target: 5'- cGCUCGG-CGGcauUCggCGACGGcgAUCg -3' miRNA: 3'- -CGAGCUaGUCu--AGuaGCUGUUuaUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 19265 | 0.66 | 0.999832 |
Target: 5'- gGCgUCGuAUCAGAUCAaggugcagacgaccgUCGACGGAc--- -3' miRNA: 3'- -CG-AGC-UAGUCUAGU---------------AGCUGUUUauag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 43276 | 0.66 | 0.999812 |
Target: 5'- aGCUCGAggAGGUCGcgGACGGccugcuGUAUCg -3' miRNA: 3'- -CGAGCUagUCUAGUagCUGUU------UAUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 23834 | 0.66 | 0.999753 |
Target: 5'- cGCUCGAUac---UAUCGACAAGUGc- -3' miRNA: 3'- -CGAGCUAgucuaGUAGCUGUUUAUag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 14908 | 0.67 | 0.99914 |
Target: 5'- cGCUCGAUCggugcagcaaaaAGAUCAgCGguuGCGAAcGUCg -3' miRNA: 3'- -CGAGCUAG------------UCUAGUaGC---UGUUUaUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 16013 | 0.67 | 0.999583 |
Target: 5'- aGCUCGAgcaUCcGGUCGggcgCGACGAG-AUCc -3' miRNA: 3'- -CGAGCU---AGuCUAGUa---GCUGUUUaUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 21000 | 0.67 | 0.999465 |
Target: 5'- aGCUCGAUCuGcUC-UCGACGAuccuuacGUCg -3' miRNA: 3'- -CGAGCUAGuCuAGuAGCUGUUua-----UAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 14431 | 0.68 | 0.998343 |
Target: 5'- aGCUCGAUCAG-UCGaccCGGCucgagcuguuGGAUGUCc -3' miRNA: 3'- -CGAGCUAGUCuAGUa--GCUG----------UUUAUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 3764 | 0.69 | 0.996995 |
Target: 5'- cGC-CGAUCGGAUCAUgGGCcGGccUCa -3' miRNA: 3'- -CGaGCUAGUCUAGUAgCUGuUUauAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 19485 | 0.7 | 0.992698 |
Target: 5'- gGCUgGAUCAcgaacgcGAUgAUCGGCAAcuAUAUCc -3' miRNA: 3'- -CGAgCUAGU-------CUAgUAGCUGUU--UAUAG- -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 11119 | 0.7 | 0.991584 |
Target: 5'- aGCUCGcgcGUCAGAUUGUCGAUg------ -3' miRNA: 3'- -CGAGC---UAGUCUAGUAGCUGuuuauag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 7138 | 0.74 | 0.946761 |
Target: 5'- uCUCGGUCGGAggUGUCGACGAGUu-- -3' miRNA: 3'- cGAGCUAGUCUa-GUAGCUGUUUAuag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 15369 | 0.75 | 0.903257 |
Target: 5'- gGCUCGAUCGG--CAUCGACGAc---- -3' miRNA: 3'- -CGAGCUAGUCuaGUAGCUGUUuauag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 53675 | 0.76 | 0.871358 |
Target: 5'- aCUCGAUCAaGUCGUCGACGGGc--- -3' miRNA: 3'- cGAGCUAGUcUAGUAGCUGUUUauag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 5920 | 0.84 | 0.503906 |
Target: 5'- uCUUGAUCAGAUCGUCGGCAAc---- -3' miRNA: 3'- cGAGCUAGUCUAGUAGCUGUUuauag -5' |
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24914 | 5' | -43.5 | NC_005284.1 | + | 10328 | 1.16 | 0.007116 |
Target: 5'- cGCUCGAUCAGAUCAUCGACAAAUAUCg -3' miRNA: 3'- -CGAGCUAGUCUAGUAGCUGUUUAUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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