miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24915 5' -51.6 NC_005284.1 + 33431 0.66 0.928135
Target:  5'- aCGAACgggCGGUGUCGuuCGAGGcgugguguGAUCGc -3'
miRNA:   3'- -GCUUGga-GCCGCAGCu-GCUCU--------UUAGC- -5'
24915 5' -51.6 NC_005284.1 + 11704 0.66 0.903095
Target:  5'- aCGAGuuUCGcCGUCGACGGGAc---- -3'
miRNA:   3'- -GCUUggAGCcGCAGCUGCUCUuuagc -5'
24915 5' -51.6 NC_005284.1 + 14097 0.67 0.896144
Target:  5'- gGAACugCUCGGCGaggGGCcGGAGAUCGa -3'
miRNA:   3'- gCUUG--GAGCCGCag-CUGcUCUUUAGC- -5'
24915 5' -51.6 NC_005284.1 + 37160 0.68 0.857446
Target:  5'- uGAAUCUCGccggcGCGUCGAUG-GcgGUCGa -3'
miRNA:   3'- gCUUGGAGC-----CGCAGCUGCuCuuUAGC- -5'
24915 5' -51.6 NC_005284.1 + 47808 0.68 0.840246
Target:  5'- gCGAGCgCUUGGCGgcgcugCGAUGGGugcUCGg -3'
miRNA:   3'- -GCUUG-GAGCCGCa-----GCUGCUCuuuAGC- -5'
24915 5' -51.6 NC_005284.1 + 6934 0.68 0.840246
Target:  5'- gGGuAUCUCGGCGUCGcACcgGAGAAggCGc -3'
miRNA:   3'- gCU-UGGAGCCGCAGC-UG--CUCUUuaGC- -5'
24915 5' -51.6 NC_005284.1 + 21901 0.68 0.839362
Target:  5'- gGAACgcguuUUCGGCGUCGccggcgacgaucaGCGcGAGAUCGa -3'
miRNA:   3'- gCUUG-----GAGCCGCAGC-------------UGCuCUUUAGC- -5'
24915 5' -51.6 NC_005284.1 + 48850 0.69 0.803262
Target:  5'- gCGAgcACCgcgaGGCGaaagCGGCGgAGAAGUCGg -3'
miRNA:   3'- -GCU--UGGag--CCGCa---GCUGC-UCUUUAGC- -5'
24915 5' -51.6 NC_005284.1 + 5378 0.71 0.653527
Target:  5'- uGAGCCgccaucgagaaGGCGcCGACGAGGAAUUc -3'
miRNA:   3'- gCUUGGag---------CCGCaGCUGCUCUUUAGc -5'
24915 5' -51.6 NC_005284.1 + 46533 0.73 0.556515
Target:  5'- uCGGACgCUCGGCGgcauUCGGCGAcGGcGAUCGg -3'
miRNA:   3'- -GCUUG-GAGCCGC----AGCUGCU-CU-UUAGC- -5'
24915 5' -51.6 NC_005284.1 + 47994 0.74 0.524231
Target:  5'- gGAucACCUUGGcCGUCGGCGGGAAcugcUCGc -3'
miRNA:   3'- gCU--UGGAGCC-GCAGCUGCUCUUu---AGC- -5'
24915 5' -51.6 NC_005284.1 + 8688 0.75 0.482365
Target:  5'- aCGAGCC--GGcCGUCGACGAGAGAcCGc -3'
miRNA:   3'- -GCUUGGagCC-GCAGCUGCUCUUUaGC- -5'
24915 5' -51.6 NC_005284.1 + 27940 0.75 0.432434
Target:  5'- gGAucgcCCUCGGCGUUGACGuGAucAUCGc -3'
miRNA:   3'- gCUu---GGAGCCGCAGCUGCuCUu-UAGC- -5'
24915 5' -51.6 NC_005284.1 + 48897 0.77 0.342334
Target:  5'- uCGAGCCac-GCGUCGACGGGAAccaGUCGg -3'
miRNA:   3'- -GCUUGGagcCGCAGCUGCUCUU---UAGC- -5'
24915 5' -51.6 NC_005284.1 + 10573 1.09 0.003273
Target:  5'- uCGAACCUCGGCGUCGACGAGAAAUCGc -3'
miRNA:   3'- -GCUUGGAGCCGCAGCUGCUCUUUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.