miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24916 3' -55.8 NC_005284.1 + 36893 0.66 0.711209
Target:  5'- cAAGGgCGAGgcCGAAGCGCu--CGAg -3'
miRNA:   3'- cUUCCgGCUCauGCUUCGCGccuGCU- -5'
24916 3' -55.8 NC_005284.1 + 45643 0.66 0.700504
Target:  5'- ---aGCCGAGU-----GCGCGGGCGAc -3'
miRNA:   3'- cuucCGGCUCAugcuuCGCGCCUGCU- -5'
24916 3' -55.8 NC_005284.1 + 39819 0.66 0.689732
Target:  5'- -cGGGCCGcGUGCcgcauugcauGGGCGCGGcCGAu -3'
miRNA:   3'- cuUCCGGCuCAUGc---------UUCGCGCCuGCU- -5'
24916 3' -55.8 NC_005284.1 + 11803 0.68 0.580715
Target:  5'- --cGGCCGAG-GCGGAGCaggucGCGcGCGAg -3'
miRNA:   3'- cuuCCGGCUCaUGCUUCG-----CGCcUGCU- -5'
24916 3' -55.8 NC_005284.1 + 50438 0.69 0.506297
Target:  5'- gGAAGGCCGGGgcgAUGAAG-GCGaGAaaCGAa -3'
miRNA:   3'- -CUUCCGGCUCa--UGCUUCgCGC-CU--GCU- -5'
24916 3' -55.8 NC_005284.1 + 47730 0.69 0.506297
Target:  5'- aGAAGGCCGugcucggcGGUACGGcGGCGCGcGuACGu -3'
miRNA:   3'- -CUUCCGGC--------UCAUGCU-UCGCGC-C-UGCu -5'
24916 3' -55.8 NC_005284.1 + 38076 0.69 0.485755
Target:  5'- --cGuGCCGAuGUGgcuCGucGCGCGGACGAa -3'
miRNA:   3'- cuuC-CGGCU-CAU---GCuuCGCGCCUGCU- -5'
24916 3' -55.8 NC_005284.1 + 6678 0.69 0.485755
Target:  5'- cGAcGGCCGGcGUACG-GGUcCGGACGAa -3'
miRNA:   3'- -CUuCCGGCU-CAUGCuUCGcGCCUGCU- -5'
24916 3' -55.8 NC_005284.1 + 36277 0.7 0.445924
Target:  5'- uGAAGGUCGAGUACGA---GCGGAg-- -3'
miRNA:   3'- -CUUCCGGCUCAUGCUucgCGCCUgcu -5'
24916 3' -55.8 NC_005284.1 + 11932 0.71 0.407983
Target:  5'- aGAuGGCCGAG---GAGGCGCuGACGAg -3'
miRNA:   3'- -CUuCCGGCUCaugCUUCGCGcCUGCU- -5'
24916 3' -55.8 NC_005284.1 + 27593 0.71 0.389784
Target:  5'- cGAAGGCCGAGgGCaAAGCGCcGcCGAu -3'
miRNA:   3'- -CUUCCGGCUCaUGcUUCGCGcCuGCU- -5'
24916 3' -55.8 NC_005284.1 + 6817 0.76 0.20873
Target:  5'- cGAGGCCGAGgggGCGAuucgcaccgaguuGGCGCGcGCGAu -3'
miRNA:   3'- cUUCCGGCUCa--UGCU-------------UCGCGCcUGCU- -5'
24916 3' -55.8 NC_005284.1 + 10892 1.09 0.000928
Target:  5'- aGAAGGCCGAGUACGAAGCGCGGACGAa -3'
miRNA:   3'- -CUUCCGGCUCAUGCUUCGCGCCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.