Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24916 | 3' | -55.8 | NC_005284.1 | + | 45643 | 0.66 | 0.700504 |
Target: 5'- ---aGCCGAGU-----GCGCGGGCGAc -3' miRNA: 3'- cuucCGGCUCAugcuuCGCGCCUGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 36893 | 0.66 | 0.711209 |
Target: 5'- cAAGGgCGAGgcCGAAGCGCu--CGAg -3' miRNA: 3'- cUUCCgGCUCauGCUUCGCGccuGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 39819 | 0.66 | 0.689732 |
Target: 5'- -cGGGCCGcGUGCcgcauugcauGGGCGCGGcCGAu -3' miRNA: 3'- cuUCCGGCuCAUGc---------UUCGCGCCuGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 11803 | 0.68 | 0.580715 |
Target: 5'- --cGGCCGAG-GCGGAGCaggucGCGcGCGAg -3' miRNA: 3'- cuuCCGGCUCaUGCUUCG-----CGCcUGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 50438 | 0.69 | 0.506297 |
Target: 5'- gGAAGGCCGGGgcgAUGAAG-GCGaGAaaCGAa -3' miRNA: 3'- -CUUCCGGCUCa--UGCUUCgCGC-CU--GCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 47730 | 0.69 | 0.506297 |
Target: 5'- aGAAGGCCGugcucggcGGUACGGcGGCGCGcGuACGu -3' miRNA: 3'- -CUUCCGGC--------UCAUGCU-UCGCGC-C-UGCu -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 38076 | 0.69 | 0.485755 |
Target: 5'- --cGuGCCGAuGUGgcuCGucGCGCGGACGAa -3' miRNA: 3'- cuuC-CGGCU-CAU---GCuuCGCGCCUGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 6678 | 0.69 | 0.485755 |
Target: 5'- cGAcGGCCGGcGUACG-GGUcCGGACGAa -3' miRNA: 3'- -CUuCCGGCU-CAUGCuUCGcGCCUGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 36277 | 0.7 | 0.445924 |
Target: 5'- uGAAGGUCGAGUACGA---GCGGAg-- -3' miRNA: 3'- -CUUCCGGCUCAUGCUucgCGCCUgcu -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 11932 | 0.71 | 0.407983 |
Target: 5'- aGAuGGCCGAG---GAGGCGCuGACGAg -3' miRNA: 3'- -CUuCCGGCUCaugCUUCGCGcCUGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 27593 | 0.71 | 0.389784 |
Target: 5'- cGAAGGCCGAGgGCaAAGCGCcGcCGAu -3' miRNA: 3'- -CUUCCGGCUCaUGcUUCGCGcCuGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 6817 | 0.76 | 0.20873 |
Target: 5'- cGAGGCCGAGgggGCGAuucgcaccgaguuGGCGCGcGCGAu -3' miRNA: 3'- cUUCCGGCUCa--UGCU-------------UCGCGCcUGCU- -5' |
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24916 | 3' | -55.8 | NC_005284.1 | + | 10892 | 1.09 | 0.000928 |
Target: 5'- aGAAGGCCGAGUACGAAGCGCGGACGAa -3' miRNA: 3'- -CUUCCGGCUCAUGCUUCGCGCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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