Results 41 - 60 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24919 | 3' | -53.8 | NC_005284.1 | + | 11610 | 0.67 | 0.747848 |
Target: 5'- gCCGAGcgucagcgugacGUGCAGCGCGaacUCGGgGCGauGUCg -3' miRNA: 3'- -GGCUC------------UACGUCGCGU---AGUUgUGC--CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 23313 | 0.67 | 0.768483 |
Target: 5'- aUCGAuaguUGCuuGCGUGcUCGACACGGCUc -3' miRNA: 3'- -GGCUcu--ACGu-CGCGU-AGUUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 1379 | 0.67 | 0.758231 |
Target: 5'- uUCGAGcAuuucgaucaccUGcCGGCGCuuGUCGaaGCACGGCCc -3' miRNA: 3'- -GGCUC-U-----------AC-GUCGCG--UAGU--UGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 9025 | 0.67 | 0.744709 |
Target: 5'- cCCGAGAUGCGaCGCGUUguuugcgauccgcuGAUACaGCUc -3' miRNA: 3'- -GGCUCUACGUcGCGUAG--------------UUGUGcCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 35529 | 0.67 | 0.737346 |
Target: 5'- gCGAGAUcCAGCGCGaCgAACAaGGCUg -3' miRNA: 3'- gGCUCUAcGUCGCGUaG-UUGUgCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 6839 | 0.68 | 0.712806 |
Target: 5'- aCCGAGuugGCGcGCGCgAUCGAUcgugugcucggaggGCGGCg -3' miRNA: 3'- -GGCUCua-CGU-CGCG-UAGUUG--------------UGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 17886 | 0.68 | 0.716034 |
Target: 5'- gCCG-GAUcgGCgGGCGCAUCcGCgcaGCGGCUg -3' miRNA: 3'- -GGCuCUA--CG-UCGCGUAGuUG---UGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 43376 | 0.68 | 0.716034 |
Target: 5'- gCGAucGAcGCAGCGCGUCAagucccGCGCuGUCg -3' miRNA: 3'- gGCU--CUaCGUCGCGUAGU------UGUGcCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 38666 | 0.68 | 0.716034 |
Target: 5'- aCCGAcgguAUGCA-UGgGUCGACGCGGCg -3' miRNA: 3'- -GGCUc---UACGUcGCgUAGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 48968 | 0.68 | 0.705247 |
Target: 5'- aUCGAcGAaGCGGUGCu---GCGCGGCUg -3' miRNA: 3'- -GGCU-CUaCGUCGCGuaguUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 34730 | 0.68 | 0.683467 |
Target: 5'- cCCGAGAga-AGCGUuUCGAguuCGGCCu -3' miRNA: 3'- -GGCUCUacgUCGCGuAGUUgu-GCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 17045 | 0.68 | 0.720326 |
Target: 5'- gCGuGAUGCGGCGCAcgcggaUCaAccaaccauuuuuugcGCGCGGCa -3' miRNA: 3'- gGCuCUACGUCGCGU------AG-U---------------UGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 45789 | 0.68 | 0.716034 |
Target: 5'- gCCGcgaAGAUGUacAGcCGUGUCGacGCGCGGUCg -3' miRNA: 3'- -GGC---UCUACG--UC-GCGUAGU--UGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 27209 | 0.68 | 0.661489 |
Target: 5'- gCCGuuGGAcgucugcauacgUGCAGCGCGUCcACcacuCGGUCa -3' miRNA: 3'- -GGC--UCU------------ACGUCGCGUAGuUGu---GCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 49274 | 0.68 | 0.661489 |
Target: 5'- gCGAcGUGacgaAGCGCG-CuuCACGGCCg -3' miRNA: 3'- gGCUcUACg---UCGCGUaGuuGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 21924 | 0.68 | 0.672497 |
Target: 5'- gCGAcGAU-CAGCGCGagaUCGACaaacugACGGCCu -3' miRNA: 3'- gGCU-CUAcGUCGCGU---AGUUG------UGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 23194 | 0.68 | 0.672497 |
Target: 5'- gUGAuGGcUGCAGCuGCGUCGACgACGGgCg -3' miRNA: 3'- gGCU-CU-ACGUCG-CGUAGUUG-UGCCgG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 9764 | 0.68 | 0.683467 |
Target: 5'- gUCGAGgcGaCGGCGCAagcUCAcgucgcaacgGCGCGcGCCa -3' miRNA: 3'- -GGCUCuaC-GUCGCGU---AGU----------UGUGC-CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 10519 | 0.68 | 0.683467 |
Target: 5'- gCCGAucagGCAGCGCucgAUCGAUuccucgcCGGCCu -3' miRNA: 3'- -GGCUcua-CGUCGCG---UAGUUGu------GCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 50796 | 0.68 | 0.672497 |
Target: 5'- cCCGAaAUGCAccgaucGCGCAUCccggaguGCgAUGGCCg -3' miRNA: 3'- -GGCUcUACGU------CGCGUAGu------UG-UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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