miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 23586 0.72 0.447725
Target:  5'- gCGGGucgaGCGGUuCAUCGACGCGGCg -3'
miRNA:   3'- gGCUCua--CGUCGcGUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 457 0.72 0.437928
Target:  5'- gCGAGccgGCAGCGCcugGUCGGCGCaaaGCCg -3'
miRNA:   3'- gGCUCua-CGUCGCG---UAGUUGUGc--CGG- -5'
24919 3' -53.8 NC_005284.1 + 42006 0.72 0.437928
Target:  5'- -gGAGGUGCgacAGCGUAUCuucgcgAGCGCGuGCCg -3'
miRNA:   3'- ggCUCUACG---UCGCGUAG------UUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 38801 0.71 0.530055
Target:  5'- uCCGGcgccAUGCAGCGCAUUgAGC-CGGCa -3'
miRNA:   3'- -GGCUc---UACGUCGCGUAG-UUGuGCCGg -5'
24919 3' -53.8 NC_005284.1 + 21738 0.71 0.508883
Target:  5'- gCCGAc--GCGGCgGCAUCGuGCGCGGCg -3'
miRNA:   3'- -GGCUcuaCGUCG-CGUAGU-UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 33364 0.71 0.528989
Target:  5'- gCGGGAUGCAuggcaagaagcacGCGCggCAGCAUcGCCc -3'
miRNA:   3'- gGCUCUACGU-------------CGCGuaGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 49312 0.71 0.540763
Target:  5'- cCCGAGGguaCGGCGaugGUUGGCACGGCa -3'
miRNA:   3'- -GGCUCUac-GUCGCg--UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 9558 0.71 0.540763
Target:  5'- aCGAG--GCGGCGCAggCAGCGCucGCCa -3'
miRNA:   3'- gGCUCuaCGUCGCGUa-GUUGUGc-CGG- -5'
24919 3' -53.8 NC_005284.1 + 40618 0.71 0.539688
Target:  5'- gCCGAGGaauugaaUGUGGCGCAa-GGCGCGGUUa -3'
miRNA:   3'- -GGCUCU-------ACGUCGCGUagUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 15241 0.71 0.487045
Target:  5'- gCGAGAUugucgcucucGUucauucgcaucccGGCGCAUCGGCACaGCCg -3'
miRNA:   3'- gGCUCUA----------CG-------------UCGCGUAGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 958 0.71 0.488075
Target:  5'- gCCGAGGUGUacgccGGCGCGaCGACugaaaagcaGGCCu -3'
miRNA:   3'- -GGCUCUACG-----UCGCGUaGUUGug-------CCGG- -5'
24919 3' -53.8 NC_005284.1 + 15138 0.71 0.488075
Target:  5'- aCCGAGAgcgGCGagauauacguGCGCugccgCAACcuuGCGGCCg -3'
miRNA:   3'- -GGCUCUa--CGU----------CGCGua---GUUG---UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 46521 0.71 0.494277
Target:  5'- aCG-GAUGguGCGaagggagguccgaAUCAGCACGGCa -3'
miRNA:   3'- gGCuCUACguCGCg------------UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 46577 0.71 0.495314
Target:  5'- gCCGAGcaugGCGGCGCAgugggCAACgccgaacgucccgaGCGGCg -3'
miRNA:   3'- -GGCUCua--CGUCGCGUa----GUUG--------------UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 37613 0.71 0.498431
Target:  5'- aCGGGGUGacgaucgaCAGCaGCAcgagaaaCAGCACGGCCg -3'
miRNA:   3'- gGCUCUAC--------GUCG-CGUa------GUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40700 0.71 0.498431
Target:  5'- uCCGAGAUGCcaaGGCcuuGCAUUugacucGCGCgGGCCa -3'
miRNA:   3'- -GGCUCUACG---UCG---CGUAGu-----UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 30645 0.71 0.498431
Target:  5'- uCCGGGAauucguugugcgUGCGGC-CGUCgAGCAgcCGGCCg -3'
miRNA:   3'- -GGCUCU------------ACGUCGcGUAG-UUGU--GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 47465 0.7 0.573284
Target:  5'- gCCGAGAagaugGCu-CGCAugcUCGACGuCGGCCa -3'
miRNA:   3'- -GGCUCUa----CGucGCGU---AGUUGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45194 0.7 0.595221
Target:  5'- cUCGAcGAUcGCAGCGUcgCAGCagucaACGGCg -3'
miRNA:   3'- -GGCU-CUA-CGUCGCGuaGUUG-----UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 15034 0.7 0.573284
Target:  5'- gCCGAacgGCAGCGCGUUAuuCAC-GCCa -3'
miRNA:   3'- -GGCUcuaCGUCGCGUAGUu-GUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.