miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 11329 0.7 0.573284
Target:  5'- uCCGgcagcGGAUcgcGCAacuGCGCGUCGAgGCGGUCg -3'
miRNA:   3'- -GGC-----UCUA---CGU---CGCGUAGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 15034 0.7 0.573284
Target:  5'- gCCGAacgGCAGCGCGUUAuuCAC-GCCa -3'
miRNA:   3'- -GGCUcuaCGUCGCGUAGUu-GUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 47465 0.7 0.573284
Target:  5'- gCCGAGAagaugGCu-CGCAugcUCGACGuCGGCCa -3'
miRNA:   3'- -GGCUCUa----CGucGCGU---AGUUGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40924 0.7 0.594121
Target:  5'- uUCGAGAa--GGCGUGUUcaauuugAACGCGGCCg -3'
miRNA:   3'- -GGCUCUacgUCGCGUAG-------UUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45194 0.7 0.595221
Target:  5'- cUCGAcGAUcGCAGCGUcgCAGCagucaACGGCg -3'
miRNA:   3'- -GGCU-CUA-CGUCGCGuaGUUG-----UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 48985 0.7 0.595221
Target:  5'- cUCGAG--GCGGCGCAgCGACACcuucGCCg -3'
miRNA:   3'- -GGCUCuaCGUCGCGUaGUUGUGc---CGG- -5'
24919 3' -53.8 NC_005284.1 + 31261 0.7 0.595221
Target:  5'- gUCGAGGUuuGGCGUGUCGGCGaucaGGCg -3'
miRNA:   3'- -GGCUCUAcgUCGCGUAGUUGUg---CCGg -5'
24919 3' -53.8 NC_005284.1 + 13877 0.7 0.599626
Target:  5'- gCCGAauUGCAGUGCAUCAACuACaacgcgacuucguuuGGCg -3'
miRNA:   3'- -GGCUcuACGUCGCGUAGUUG-UG---------------CCGg -5'
24919 3' -53.8 NC_005284.1 + 18192 0.69 0.606242
Target:  5'- gCCGGGGaaguacGCGGCG-AUCGACgACGGCg -3'
miRNA:   3'- -GGCUCUa-----CGUCGCgUAGUUG-UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 10571 0.69 0.606242
Target:  5'- uCCGAGAccaccGaCGGCGCAUCGccaaACGuCGGCa -3'
miRNA:   3'- -GGCUCUa----C-GUCGCGUAGU----UGU-GCCGg -5'
24919 3' -53.8 NC_005284.1 + 47976 0.69 0.628341
Target:  5'- gCGGGAacUGCucGCGCAU-AGCGCGGUUg -3'
miRNA:   3'- gGCUCU--ACGu-CGCGUAgUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 33997 0.69 0.632765
Target:  5'- -gGGGGUGCGgcgagggccgauucuGCGCGuUCGAgGCGGUCg -3'
miRNA:   3'- ggCUCUACGU---------------CGCGU-AGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 12751 0.69 0.6394
Target:  5'- cCCGcuGGGUGUAGC-CGUCGccgaACugGGCUu -3'
miRNA:   3'- -GGC--UCUACGUCGcGUAGU----UGugCCGG- -5'
24919 3' -53.8 NC_005284.1 + 18127 0.69 0.6394
Target:  5'- gUGAGcGUGCAGgaaaGCGaCGACgACGGCCa -3'
miRNA:   3'- gGCUC-UACGUCg---CGUaGUUG-UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31911 0.69 0.6394
Target:  5'- gCCGAccguCAGCGCGUCGuuauucGCAUGGUCg -3'
miRNA:   3'- -GGCUcuacGUCGCGUAGU------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10381 0.69 0.647139
Target:  5'- uCUGAGcgGCuGCGCAcgaagcaagaggcgUCGcGgGCGGCCg -3'
miRNA:   3'- -GGCUCuaCGuCGCGU--------------AGU-UgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 46243 0.69 0.650453
Target:  5'- gUGGGAUGCGGaauggaCGCAUCuACGCGcGUCc -3'
miRNA:   3'- gGCUCUACGUC------GCGUAGuUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 51229 0.68 0.661489
Target:  5'- aCGGGGUGCcccaguacaccAGCcaGUugAUCAGCACGGUCc -3'
miRNA:   3'- gGCUCUACG-----------UCG--CG--UAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35251 0.68 0.661489
Target:  5'- cCCaAGGUGCGcCGCgAUCGcACACGGCa -3'
miRNA:   3'- -GGcUCUACGUcGCG-UAGU-UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 49274 0.68 0.661489
Target:  5'- gCGAcGUGacgaAGCGCG-CuuCACGGCCg -3'
miRNA:   3'- gGCUcUACg---UCGCGUaGuuGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.