miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 15268 0.74 0.372988
Target:  5'- uCCGAc--GCgAGCGCgaacuggucgGUCGGCACGGCCg -3'
miRNA:   3'- -GGCUcuaCG-UCGCG----------UAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 15404 0.66 0.798345
Target:  5'- gCCGGGAgGCuacGuCGCG-CGACuaguCGGCCg -3'
miRNA:   3'- -GGCUCUaCGu--C-GCGUaGUUGu---GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 16171 0.67 0.758231
Target:  5'- aUGGGGcuCGGCGCGUCGauggcGCugGGCg -3'
miRNA:   3'- gGCUCUacGUCGCGUAGU-----UGugCCGg -5'
24919 3' -53.8 NC_005284.1 + 16295 0.66 0.798345
Target:  5'- gCGAGGccggccuguUGCGGacugaGCAUCuGCACGauGCCg -3'
miRNA:   3'- gGCUCU---------ACGUCg----CGUAGuUGUGC--CGG- -5'
24919 3' -53.8 NC_005284.1 + 16408 0.73 0.409295
Target:  5'- gCGGGGUGaAGCGCAUC--UACGGCg -3'
miRNA:   3'- gGCUCUACgUCGCGUAGuuGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 16971 0.66 0.778594
Target:  5'- uCCGc-GUGCGcCGCAUCAcgccgaacgcgcACACGGCg -3'
miRNA:   3'- -GGCucUACGUcGCGUAGU------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 17045 0.68 0.720326
Target:  5'- gCGuGAUGCGGCGCAcgcggaUCaAccaaccauuuuuugcGCGCGGCa -3'
miRNA:   3'- gGCuCUACGUCGCGU------AG-U---------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 17886 0.68 0.716034
Target:  5'- gCCG-GAUcgGCgGGCGCAUCcGCgcaGCGGCUg -3'
miRNA:   3'- -GGCuCUA--CG-UCGCGUAGuUG---UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 18127 0.69 0.6394
Target:  5'- gUGAGcGUGCAGgaaaGCGaCGACgACGGCCa -3'
miRNA:   3'- gGCUC-UACGUCg---CGUaGUUG-UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 18192 0.69 0.606242
Target:  5'- gCCGGGGaaguacGCGGCG-AUCGACgACGGCg -3'
miRNA:   3'- -GGCUCUa-----CGUCGCgUAGUUG-UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 18353 0.67 0.747848
Target:  5'- gUCGAGAgGCGGaCGU-UCGACGgCGGCg -3'
miRNA:   3'- -GGCUCUaCGUC-GCGuAGUUGU-GCCGg -5'
24919 3' -53.8 NC_005284.1 + 18404 0.67 0.737346
Target:  5'- gCGAGuggGUgaaGGUGcCGUCGACagGCGGCCu -3'
miRNA:   3'- gGCUCua-CG---UCGC-GUAGUUG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 19038 0.66 0.797374
Target:  5'- gCCGAGGgcgauaugGCGGuCGCGaagaaagUCGAaacaguCGCGGCCc -3'
miRNA:   3'- -GGCUCUa-------CGUC-GCGU-------AGUU------GUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 19402 0.7 0.572192
Target:  5'- aCGAGG-GCGGUGCAggcgugaUCGGCGC-GCCg -3'
miRNA:   3'- gGCUCUaCGUCGCGU-------AGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 21338 0.66 0.785581
Target:  5'- gCGGGgcGCGugucGCGCgAUCAACGagucggacaacgguCGGCCg -3'
miRNA:   3'- gGCUCuaCGU----CGCG-UAGUUGU--------------GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21367 0.68 0.694387
Target:  5'- gCCGuuGUGCuGcCGCAguaggcGCGCGGCCc -3'
miRNA:   3'- -GGCucUACGuC-GCGUagu---UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21601 0.68 0.680181
Target:  5'- gCCGAucaGGUGCucgacgcaAGCGCcggccgccaugccaAgCAGCGCGGCCa -3'
miRNA:   3'- -GGCU---CUACG--------UCGCG--------------UaGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21659 0.66 0.798345
Target:  5'- gCCGcgcacGAUGCcGcCGCGUCGGCgguGGCCg -3'
miRNA:   3'- -GGCu----CUACGuC-GCGUAGUUGug-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 21661 0.73 0.389959
Target:  5'- uUCGGcAUGCcgcuGCGCGUCGaacgcccGCGCGGCCu -3'
miRNA:   3'- -GGCUcUACGu---CGCGUAGU-------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21738 0.71 0.508883
Target:  5'- gCCGAc--GCGGCgGCAUCGuGCGCGGCg -3'
miRNA:   3'- -GGCUcuaCGUCG-CGUAGU-UGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.