miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 32729 0.68 0.694387
Target:  5'- gCGGGAgaggcgGCAGCGUggcgcuAUCGAacgaGCGGCg -3'
miRNA:   3'- gGCUCUa-----CGUCGCG------UAGUUg---UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 33364 0.71 0.528989
Target:  5'- gCGGGAUGCAuggcaagaagcacGCGCggCAGCAUcGCCc -3'
miRNA:   3'- gGCUCUACGU-------------CGCGuaGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 33997 0.69 0.632765
Target:  5'- -gGGGGUGCGgcgagggccgauucuGCGCGuUCGAgGCGGUCg -3'
miRNA:   3'- ggCUCUACGU---------------CGCGU-AGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34184 0.66 0.798345
Target:  5'- aUCGGcGUGCAGUuuuacgGUGUCGGCACGGaaCCg -3'
miRNA:   3'- -GGCUcUACGUCG------CGUAGUUGUGCC--GG- -5'
24919 3' -53.8 NC_005284.1 + 34288 0.81 0.123703
Target:  5'- gUCGcGAUGUgcucguccgucAGCGCAUCAGCGCGGCUc -3'
miRNA:   3'- -GGCuCUACG-----------UCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34730 0.68 0.683467
Target:  5'- cCCGAGAga-AGCGUuUCGAguuCGGCCu -3'
miRNA:   3'- -GGCUCUacgUCGCGuAGUUgu-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35072 0.72 0.477822
Target:  5'- aCGGGAaGCAGCGCuacCAccgaugugagacGCACGGUCc -3'
miRNA:   3'- gGCUCUaCGUCGCGua-GU------------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35251 0.68 0.661489
Target:  5'- cCCaAGGUGCGcCGCgAUCGcACACGGCa -3'
miRNA:   3'- -GGcUCUACGUcGCG-UAGU-UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 35529 0.67 0.737346
Target:  5'- gCGAGAUcCAGCGCGaCgAACAaGGCUg -3'
miRNA:   3'- gGCUCUAcGUCGCGUaG-UUGUgCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35695 0.68 0.705247
Target:  5'- uUCGAGcuUGuCGGCGCuGUCGACA-GGCUg -3'
miRNA:   3'- -GGCUCu-AC-GUCGCG-UAGUUGUgCCGG- -5'
24919 3' -53.8 NC_005284.1 + 37613 0.71 0.498431
Target:  5'- aCGGGGUGacgaucgaCAGCaGCAcgagaaaCAGCACGGCCg -3'
miRNA:   3'- gGCUCUAC--------GUCG-CGUa------GUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 38666 0.68 0.716034
Target:  5'- aCCGAcgguAUGCA-UGgGUCGACGCGGCg -3'
miRNA:   3'- -GGCUc---UACGUcGCgUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 38801 0.71 0.530055
Target:  5'- uCCGGcgccAUGCAGCGCAUUgAGC-CGGCa -3'
miRNA:   3'- -GGCUc---UACGUCGCGUAG-UUGuGCCGg -5'
24919 3' -53.8 NC_005284.1 + 39405 0.67 0.726738
Target:  5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3'
miRNA:   3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5'
24919 3' -53.8 NC_005284.1 + 39817 0.75 0.299619
Target:  5'- aCCGGGccgcGUGCcGCauuGCAUgGGCGCGGCCg -3'
miRNA:   3'- -GGCUC----UACGuCG---CGUAgUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39984 0.66 0.817395
Target:  5'- gCCGAccucGAaGuCAGCGCA--AACGCGaGCCg -3'
miRNA:   3'- -GGCU----CUaC-GUCGCGUagUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 40618 0.71 0.539688
Target:  5'- gCCGAGGaauugaaUGUGGCGCAa-GGCGCGGUUa -3'
miRNA:   3'- -GGCUCU-------ACGUCGCGUagUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40700 0.71 0.498431
Target:  5'- uCCGAGAUGCcaaGGCcuuGCAUUugacucGCGCgGGCCa -3'
miRNA:   3'- -GGCUCUACG---UCG---CGUAGu-----UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 40924 0.7 0.594121
Target:  5'- uUCGAGAa--GGCGUGUUcaauuugAACGCGGCCg -3'
miRNA:   3'- -GGCUCUacgUCGCGUAG-------UUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 41698 0.68 0.661489
Target:  5'- uCCGAugcGUGUcggAGCucGCAcUCGGCGCGGCCu -3'
miRNA:   3'- -GGCUc--UACG---UCG--CGU-AGUUGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.