miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 45699 0.7 0.562384
Target:  5'- aCGA----CcGCGCGUCGACACGGCUg -3'
miRNA:   3'- gGCUcuacGuCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45303 0.67 0.748892
Target:  5'- uUCGGuGAUcCAcGCGCucgaucucgugccguUCGACACGGCCg -3'
miRNA:   3'- -GGCU-CUAcGU-CGCGu--------------AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45194 0.7 0.595221
Target:  5'- cUCGAcGAUcGCAGCGUcgCAGCagucaACGGCg -3'
miRNA:   3'- -GGCU-CUA-CGUCGCGuaGUUG-----UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 43376 0.68 0.716034
Target:  5'- gCGAucGAcGCAGCGCGUCAagucccGCGCuGUCg -3'
miRNA:   3'- gGCU--CUaCGUCGCGUAGU------UGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 42006 0.72 0.437928
Target:  5'- -gGAGGUGCgacAGCGUAUCuucgcgAGCGCGuGCCg -3'
miRNA:   3'- ggCUCUACG---UCGCGUAG------UUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 41698 0.68 0.661489
Target:  5'- uCCGAugcGUGUcggAGCucGCAcUCGGCGCGGCCu -3'
miRNA:   3'- -GGCUc--UACG---UCG--CGU-AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40924 0.7 0.594121
Target:  5'- uUCGAGAa--GGCGUGUUcaauuugAACGCGGCCg -3'
miRNA:   3'- -GGCUCUacgUCGCGUAG-------UUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40700 0.71 0.498431
Target:  5'- uCCGAGAUGCcaaGGCcuuGCAUUugacucGCGCgGGCCa -3'
miRNA:   3'- -GGCUCUACG---UCG---CGUAGu-----UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 40618 0.71 0.539688
Target:  5'- gCCGAGGaauugaaUGUGGCGCAa-GGCGCGGUUa -3'
miRNA:   3'- -GGCUCU-------ACGUCGCGUagUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39984 0.66 0.817395
Target:  5'- gCCGAccucGAaGuCAGCGCA--AACGCGaGCCg -3'
miRNA:   3'- -GGCU----CUaC-GUCGCGUagUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 39817 0.75 0.299619
Target:  5'- aCCGGGccgcGUGCcGCauuGCAUgGGCGCGGCCg -3'
miRNA:   3'- -GGCUC----UACGuCG---CGUAgUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39405 0.67 0.726738
Target:  5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3'
miRNA:   3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5'
24919 3' -53.8 NC_005284.1 + 38801 0.71 0.530055
Target:  5'- uCCGGcgccAUGCAGCGCAUUgAGC-CGGCa -3'
miRNA:   3'- -GGCUc---UACGUCGCGUAG-UUGuGCCGg -5'
24919 3' -53.8 NC_005284.1 + 38666 0.68 0.716034
Target:  5'- aCCGAcgguAUGCA-UGgGUCGACGCGGCg -3'
miRNA:   3'- -GGCUc---UACGUcGCgUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 37613 0.71 0.498431
Target:  5'- aCGGGGUGacgaucgaCAGCaGCAcgagaaaCAGCACGGCCg -3'
miRNA:   3'- gGCUCUAC--------GUCG-CGUa------GUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35695 0.68 0.705247
Target:  5'- uUCGAGcuUGuCGGCGCuGUCGACA-GGCUg -3'
miRNA:   3'- -GGCUCu-AC-GUCGCG-UAGUUGUgCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35529 0.67 0.737346
Target:  5'- gCGAGAUcCAGCGCGaCgAACAaGGCUg -3'
miRNA:   3'- gGCUCUAcGUCGCGUaG-UUGUgCCGG- -5'
24919 3' -53.8 NC_005284.1 + 35251 0.68 0.661489
Target:  5'- cCCaAGGUGCGcCGCgAUCGcACACGGCa -3'
miRNA:   3'- -GGcUCUACGUcGCG-UAGU-UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 35072 0.72 0.477822
Target:  5'- aCGGGAaGCAGCGCuacCAccgaugugagacGCACGGUCc -3'
miRNA:   3'- gGCUCUaCGUCGCGua-GU------------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34730 0.68 0.683467
Target:  5'- cCCGAGAga-AGCGUuUCGAguuCGGCCu -3'
miRNA:   3'- -GGCUCUacgUCGCGuAGUUgu-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.