miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 34288 0.81 0.123703
Target:  5'- gUCGcGAUGUgcucguccgucAGCGCAUCAGCGCGGCUc -3'
miRNA:   3'- -GGCuCUACG-----------UCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34184 0.66 0.798345
Target:  5'- aUCGGcGUGCAGUuuuacgGUGUCGGCACGGaaCCg -3'
miRNA:   3'- -GGCUcUACGUCG------CGUAGUUGUGCC--GG- -5'
24919 3' -53.8 NC_005284.1 + 33997 0.69 0.632765
Target:  5'- -gGGGGUGCGgcgagggccgauucuGCGCGuUCGAgGCGGUCg -3'
miRNA:   3'- ggCUCUACGU---------------CGCGU-AGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 33364 0.71 0.528989
Target:  5'- gCGGGAUGCAuggcaagaagcacGCGCggCAGCAUcGCCc -3'
miRNA:   3'- gGCUCUACGU-------------CGCGuaGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 32729 0.68 0.694387
Target:  5'- gCGGGAgaggcgGCAGCGUggcgcuAUCGAacgaGCGGCg -3'
miRNA:   3'- gGCUCUa-----CGUCGCG------UAGUUg---UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 31911 0.69 0.6394
Target:  5'- gCCGAccguCAGCGCGUCGuuauucGCAUGGUCg -3'
miRNA:   3'- -GGCUcuacGUCGCGUAGU------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31708 0.67 0.747848
Target:  5'- aCGAGGUGgAauGCGCccUCGACGCcGCCc -3'
miRNA:   3'- gGCUCUACgU--CGCGu-AGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 31566 0.7 0.562384
Target:  5'- gCCGAGgcGCGcaauGCGCGcuuuuccggCGGCACGGCg -3'
miRNA:   3'- -GGCUCuaCGU----CGCGUa--------GUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 31261 0.7 0.595221
Target:  5'- gUCGAGGUuuGGCGUGUCGGCGaucaGGCg -3'
miRNA:   3'- -GGCUCUAcgUCGCGUAGUUGUg---CCGg -5'
24919 3' -53.8 NC_005284.1 + 31042 0.67 0.747848
Target:  5'- gCUGuAGAUGUggaAGCGCAggUCAACcgacccaagcaGCGGCUc -3'
miRNA:   3'- -GGC-UCUACG---UCGCGU--AGUUG-----------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 30911 0.67 0.726738
Target:  5'- gUCGGGAUGCaucgggcgGGCGCcgUGGCGCuuucGCCg -3'
miRNA:   3'- -GGCUCUACG--------UCGCGuaGUUGUGc---CGG- -5'
24919 3' -53.8 NC_005284.1 + 30774 0.68 0.705247
Target:  5'- uCCauuAUGCAgaGCGCGUCGGCAagaaagccgcCGGCCg -3'
miRNA:   3'- -GGcucUACGU--CGCGUAGUUGU----------GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 30645 0.71 0.498431
Target:  5'- uCCGGGAauucguugugcgUGCGGC-CGUCgAGCAgcCGGCCg -3'
miRNA:   3'- -GGCUCU------------ACGUCGcGUAG-UUGU--GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 28908 0.67 0.768483
Target:  5'- aUCGAuGAUGCAcUGCAUCAua--GGCCc -3'
miRNA:   3'- -GGCU-CUACGUcGCGUAGUugugCCGG- -5'
24919 3' -53.8 NC_005284.1 + 27627 0.67 0.758231
Target:  5'- -----cUGCAGCGC----ACGCGGCCa -3'
miRNA:   3'- ggcucuACGUCGCGuaguUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 27209 0.68 0.661489
Target:  5'- gCCGuuGGAcgucugcauacgUGCAGCGCGUCcACcacuCGGUCa -3'
miRNA:   3'- -GGC--UCU------------ACGUCGCGUAGuUGu---GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 26604 0.66 0.817395
Target:  5'- aCGGGA-GCGGCGCggCGA-ACuGCCg -3'
miRNA:   3'- gGCUCUaCGUCGCGuaGUUgUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 25659 0.73 0.428255
Target:  5'- aCGGGAagGCGGCGCAgccgUUcGCGCGaGCCa -3'
miRNA:   3'- gGCUCUa-CGUCGCGU----AGuUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 23739 0.66 0.778594
Target:  5'- aCGAGAUGCAGaauugaucgcccCGUAcagugcccgUGACGCGGUCg -3'
miRNA:   3'- gGCUCUACGUC------------GCGUa--------GUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23586 0.72 0.447725
Target:  5'- gCGGGucgaGCGGUuCAUCGACGCGGCg -3'
miRNA:   3'- gGCUCua--CGUCGcGUAGUUGUGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.