miRNA display CGI


Results 61 - 80 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 11329 0.7 0.573284
Target:  5'- uCCGgcagcGGAUcgcGCAacuGCGCGUCGAgGCGGUCg -3'
miRNA:   3'- -GGC-----UCUA---CGU---CGCGUAGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 47465 0.7 0.573284
Target:  5'- gCCGAGAagaugGCu-CGCAugcUCGACGuCGGCCa -3'
miRNA:   3'- -GGCUCUa----CGucGCGU---AGUUGU-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40924 0.7 0.594121
Target:  5'- uUCGAGAa--GGCGUGUUcaauuugAACGCGGCCg -3'
miRNA:   3'- -GGCUCUacgUCGCGUAG-------UUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31261 0.7 0.595221
Target:  5'- gUCGAGGUuuGGCGUGUCGGCGaucaGGCg -3'
miRNA:   3'- -GGCUCUAcgUCGCGUAGUUGUg---CCGg -5'
24919 3' -53.8 NC_005284.1 + 13877 0.7 0.599626
Target:  5'- gCCGAauUGCAGUGCAUCAACuACaacgcgacuucguuuGGCg -3'
miRNA:   3'- -GGCUcuACGUCGCGUAGUUG-UG---------------CCGg -5'
24919 3' -53.8 NC_005284.1 + 18192 0.69 0.606242
Target:  5'- gCCGGGGaaguacGCGGCG-AUCGACgACGGCg -3'
miRNA:   3'- -GGCUCUa-----CGUCGCgUAGUUG-UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 33997 0.69 0.632765
Target:  5'- -gGGGGUGCGgcgagggccgauucuGCGCGuUCGAgGCGGUCg -3'
miRNA:   3'- ggCUCUACGU---------------CGCGU-AGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31911 0.69 0.6394
Target:  5'- gCCGAccguCAGCGCGUCGuuauucGCAUGGUCg -3'
miRNA:   3'- -GGCUcuacGUCGCGUAGU------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 19402 0.7 0.572192
Target:  5'- aCGAGG-GCGGUGCAggcgugaUCGGCGC-GCCg -3'
miRNA:   3'- gGCUCUaCGUCGCGU-------AGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 45699 0.7 0.562384
Target:  5'- aCGA----CcGCGCGUCGACACGGCUg -3'
miRNA:   3'- gGCUcuacGuCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 46521 0.71 0.494277
Target:  5'- aCG-GAUGguGCGaagggagguccgaAUCAGCACGGCa -3'
miRNA:   3'- gGCuCUACguCGCg------------UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 46577 0.71 0.495314
Target:  5'- gCCGAGcaugGCGGCGCAgugggCAACgccgaacgucccgaGCGGCg -3'
miRNA:   3'- -GGCUCua--CGUCGCGUa----GUUG--------------UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 37613 0.71 0.498431
Target:  5'- aCGGGGUGacgaucgaCAGCaGCAcgagaaaCAGCACGGCCg -3'
miRNA:   3'- gGCUCUAC--------GUCG-CGUa------GUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40700 0.71 0.498431
Target:  5'- uCCGAGAUGCcaaGGCcuuGCAUUugacucGCGCgGGCCa -3'
miRNA:   3'- -GGCUCUACG---UCG---CGUAGu-----UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 30645 0.71 0.498431
Target:  5'- uCCGGGAauucguugugcgUGCGGC-CGUCgAGCAgcCGGCCg -3'
miRNA:   3'- -GGCUCU------------ACGUCGcGUAG-UUGU--GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 40618 0.71 0.539688
Target:  5'- gCCGAGGaauugaaUGUGGCGCAa-GGCGCGGUUa -3'
miRNA:   3'- -GGCUCU-------ACGUCGCGUagUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9558 0.71 0.540763
Target:  5'- aCGAG--GCGGCGCAggCAGCGCucGCCa -3'
miRNA:   3'- gGCUCuaCGUCGCGUa-GUUGUGc-CGG- -5'
24919 3' -53.8 NC_005284.1 + 49312 0.71 0.540763
Target:  5'- cCCGAGGguaCGGCGaugGUUGGCACGGCa -3'
miRNA:   3'- -GGCUCUac-GUCGCg--UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 8317 0.76 0.257217
Target:  5'- gCCGAGccGCAGCGCGagCGACAUcaggaagcggaGGCCu -3'
miRNA:   3'- -GGCUCuaCGUCGCGUa-GUUGUG-----------CCGG- -5'
24919 3' -53.8 NC_005284.1 + 39984 0.66 0.817395
Target:  5'- gCCGAccucGAaGuCAGCGCA--AACGCGaGCCg -3'
miRNA:   3'- -GGCU----CUaC-GUCGCGUagUUGUGC-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.