miRNA display CGI


Results 81 - 100 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 18353 0.67 0.747848
Target:  5'- gUCGAGAgGCGGaCGU-UCGACGgCGGCg -3'
miRNA:   3'- -GGCUCUaCGUC-GCGuAGUUGU-GCCGg -5'
24919 3' -53.8 NC_005284.1 + 31708 0.67 0.747848
Target:  5'- aCGAGGUGgAauGCGCccUCGACGCcGCCc -3'
miRNA:   3'- gGCUCUACgU--CGCGu-AGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 9025 0.67 0.744709
Target:  5'- cCCGAGAUGCGaCGCGUUguuugcgauccgcuGAUACaGCUc -3'
miRNA:   3'- -GGCUCUACGUcGCGUAG--------------UUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 35529 0.67 0.737346
Target:  5'- gCGAGAUcCAGCGCGaCgAACAaGGCUg -3'
miRNA:   3'- gGCUCUAcGUCGCGUaG-UUGUgCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39405 0.67 0.726738
Target:  5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3'
miRNA:   3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5'
24919 3' -53.8 NC_005284.1 + 12306 0.67 0.726738
Target:  5'- gCCGGGAUGCuGuCGC-UCGugGaCGuGCCc -3'
miRNA:   3'- -GGCUCUACGuC-GCGuAGUugU-GC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 7061 0.67 0.725671
Target:  5'- gUCGAGcgcgccAUGUAcGCGCGUCAcgacgaaAUACGGCg -3'
miRNA:   3'- -GGCUC------UACGU-CGCGUAGU-------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 17045 0.68 0.720326
Target:  5'- gCGuGAUGCGGCGCAcgcggaUCaAccaaccauuuuuugcGCGCGGCa -3'
miRNA:   3'- gGCuCUACGUCGCGU------AG-U---------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 27627 0.67 0.758231
Target:  5'- -----cUGCAGCGC----ACGCGGCCa -3'
miRNA:   3'- ggcucuACGUCGCGuaguUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 1379 0.67 0.758231
Target:  5'- uUCGAGcAuuucgaucaccUGcCGGCGCuuGUCGaaGCACGGCCc -3'
miRNA:   3'- -GGCUC-U-----------AC-GUCGCG--UAGU--UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23313 0.67 0.768483
Target:  5'- aUCGAuaguUGCuuGCGUGcUCGACACGGCUc -3'
miRNA:   3'- -GGCUcu--ACGu-CGCGU-AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39984 0.66 0.817395
Target:  5'- gCCGAccucGAaGuCAGCGCA--AACGCGaGCCg -3'
miRNA:   3'- -GGCU----CUaC-GUCGCGUagUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 53998 0.66 0.817395
Target:  5'- cUCGaAGAUGaAGCGC-UCuacGCGCaGGCCa -3'
miRNA:   3'- -GGC-UCUACgUCGCGuAGu--UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 8006 0.66 0.807963
Target:  5'- cCCGGcGAUGUcccgaAGCGCuUCGAUccagaacauGCGGUCg -3'
miRNA:   3'- -GGCU-CUACG-----UCGCGuAGUUG---------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 48149 0.66 0.807963
Target:  5'- aCCGGGc--CGGCGCGUaaugcgCAGCGCaccGGCCu -3'
miRNA:   3'- -GGCUCuacGUCGCGUA------GUUGUG---CCGG- -5'
24919 3' -53.8 NC_005284.1 + 16295 0.66 0.798345
Target:  5'- gCGAGGccggccuguUGCGGacugaGCAUCuGCACGauGCCg -3'
miRNA:   3'- gGCUCU---------ACGUCg----CGUAGuUGUGC--CGG- -5'
24919 3' -53.8 NC_005284.1 + 34184 0.66 0.798345
Target:  5'- aUCGGcGUGCAGUuuuacgGUGUCGGCACGGaaCCg -3'
miRNA:   3'- -GGCUcUACGUCG------CGUAGUUGUGCC--GG- -5'
24919 3' -53.8 NC_005284.1 + 14586 0.66 0.795425
Target:  5'- gCGAuGGcUGCuGCGCGUCGgaugucugcucgaaGCccGCGGCCu -3'
miRNA:   3'- gGCU-CU-ACGuCGCGUAGU--------------UG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 47545 0.66 0.788552
Target:  5'- gUCGAGcAUGCgAGC-CAUCuuCuCGGCCc -3'
miRNA:   3'- -GGCUC-UACG-UCGcGUAGuuGuGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23739 0.66 0.778594
Target:  5'- aCGAGAUGCAGaauugaucgcccCGUAcagugcccgUGACGCGGUCg -3'
miRNA:   3'- gGCUCUACGUC------------GCGUa--------GUUGUGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.