miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 17045 0.68 0.720326
Target:  5'- gCGuGAUGCGGCGCAcgcggaUCaAccaaccauuuuuugcGCGCGGCa -3'
miRNA:   3'- gGCuCUACGUCGCGU------AG-U---------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 39405 0.67 0.726738
Target:  5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3'
miRNA:   3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5'
24919 3' -53.8 NC_005284.1 + 23313 0.67 0.768483
Target:  5'- aUCGAuaguUGCuuGCGUGcUCGACACGGCUc -3'
miRNA:   3'- -GGCUcu--ACGu-CGCGU-AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 8006 0.66 0.807963
Target:  5'- cCCGGcGAUGUcccgaAGCGCuUCGAUccagaacauGCGGUCg -3'
miRNA:   3'- -GGCU-CUACG-----UCGCGuAGUUG---------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10571 0.69 0.606242
Target:  5'- uCCGAGAccaccGaCGGCGCAUCGccaaACGuCGGCa -3'
miRNA:   3'- -GGCUCUa----C-GUCGCGUAGU----UGU-GCCGg -5'
24919 3' -53.8 NC_005284.1 + 32729 0.68 0.694387
Target:  5'- gCGGGAgaggcgGCAGCGUggcgcuAUCGAacgaGCGGCg -3'
miRNA:   3'- gGCUCUa-----CGUCGCG------UAGUUg---UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 9025 0.67 0.744709
Target:  5'- cCCGAGAUGCGaCGCGUUguuugcgauccgcuGAUACaGCUc -3'
miRNA:   3'- -GGCUCUACGUcGCGUAG--------------UUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 53998 0.66 0.817395
Target:  5'- cUCGaAGAUGaAGCGC-UCuacGCGCaGGCCa -3'
miRNA:   3'- -GGC-UCUACgUCGCGuAGu--UGUG-CCGG- -5'
24919 3' -53.8 NC_005284.1 + 21367 0.68 0.694387
Target:  5'- gCCGuuGUGCuGcCGCAguaggcGCGCGGCCc -3'
miRNA:   3'- -GGCucUACGuC-GCGUagu---UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39984 0.66 0.817395
Target:  5'- gCCGAccucGAaGuCAGCGCA--AACGCGaGCCg -3'
miRNA:   3'- -GGCU----CUaC-GUCGCGUagUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 35529 0.67 0.737346
Target:  5'- gCGAGAUcCAGCGCGaCgAACAaGGCUg -3'
miRNA:   3'- gGCUCUAcGUCGCGUaG-UUGUgCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45789 0.68 0.716034
Target:  5'- gCCGcgaAGAUGUacAGcCGUGUCGacGCGCGGUCg -3'
miRNA:   3'- -GGC---UCUACG--UC-GCGUAGU--UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45303 0.67 0.748892
Target:  5'- uUCGGuGAUcCAcGCGCucgaucucgugccguUCGACACGGCCg -3'
miRNA:   3'- -GGCU-CUAcGU-CGCGu--------------AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 1379 0.67 0.758231
Target:  5'- uUCGAGcAuuucgaucaccUGcCGGCGCuuGUCGaaGCACGGCCc -3'
miRNA:   3'- -GGCUC-U-----------AC-GUCGCG--UAGU--UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 14586 0.66 0.795425
Target:  5'- gCGAuGGcUGCuGCGCGUCGgaugucugcucgaaGCccGCGGCCu -3'
miRNA:   3'- gGCU-CU-ACGuCGCGUAGU--------------UG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 48149 0.66 0.807963
Target:  5'- aCCGGGc--CGGCGCGUaaugcgCAGCGCaccGGCCu -3'
miRNA:   3'- -GGCUCuacGUCGCGUA------GUUGUG---CCGG- -5'
24919 3' -53.8 NC_005284.1 + 31566 0.7 0.562384
Target:  5'- gCCGAGgcGCGcaauGCGCGcuuuuccggCGGCACGGCg -3'
miRNA:   3'- -GGCUCuaCGU----CGCGUa--------GUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 48985 0.7 0.595221
Target:  5'- cUCGAG--GCGGCGCAgCGACACcuucGCCg -3'
miRNA:   3'- -GGCUCuaCGUCGCGUaGUUGUGc---CGG- -5'
24919 3' -53.8 NC_005284.1 + 41698 0.68 0.661489
Target:  5'- uCCGAugcGUGUcggAGCucGCAcUCGGCGCGGCCu -3'
miRNA:   3'- -GGCUc--UACG---UCG--CGU-AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21601 0.68 0.680181
Target:  5'- gCCGAucaGGUGCucgacgcaAGCGCcggccgccaugccaAgCAGCGCGGCCa -3'
miRNA:   3'- -GGCU---CUACG--------UCGCG--------------UaGUUGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.