miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 35251 0.68 0.661489
Target:  5'- cCCaAGGUGCGcCGCgAUCGcACACGGCa -3'
miRNA:   3'- -GGcUCUACGUcGCG-UAGU-UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 21367 0.68 0.694387
Target:  5'- gCCGuuGUGCuGcCGCAguaggcGCGCGGCCc -3'
miRNA:   3'- -GGCucUACGuC-GCGUagu---UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 17045 0.68 0.720326
Target:  5'- gCGuGAUGCGGCGCAcgcggaUCaAccaaccauuuuuugcGCGCGGCa -3'
miRNA:   3'- gGCuCUACGUCGCGU------AG-U---------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 39405 0.67 0.726738
Target:  5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3'
miRNA:   3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5'
24919 3' -53.8 NC_005284.1 + 45303 0.67 0.748892
Target:  5'- uUCGGuGAUcCAcGCGCucgaucucgugccguUCGACACGGCCg -3'
miRNA:   3'- -GGCU-CUAcGU-CGCGu--------------AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 1379 0.67 0.758231
Target:  5'- uUCGAGcAuuucgaucaccUGcCGGCGCuuGUCGaaGCACGGCCc -3'
miRNA:   3'- -GGCUC-U-----------AC-GUCGCG--UAGU--UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 14586 0.66 0.795425
Target:  5'- gCGAuGGcUGCuGCGCGUCGgaugucugcucgaaGCccGCGGCCu -3'
miRNA:   3'- gGCU-CU-ACGuCGCGUAGU--------------UG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 18404 0.67 0.737346
Target:  5'- gCGAGuggGUgaaGGUGcCGUCGACagGCGGCCu -3'
miRNA:   3'- gGCUCua-CG---UCGC-GUAGUUG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31042 0.67 0.747848
Target:  5'- gCUGuAGAUGUggaAGCGCAggUCAACcgacccaagcaGCGGCUc -3'
miRNA:   3'- -GGC-UCUACG---UCGCGU--AGUUG-----------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 53845 0.67 0.747848
Target:  5'- aCGGGGUGaucgcccgcCAGUucaGCAUCGAgcacaGCGGCCg -3'
miRNA:   3'- gGCUCUAC---------GUCG---CGUAGUUg----UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 6579 0.67 0.737346
Target:  5'- uCCGuGAcGaGGCGCGUaAGCGCGcGCCg -3'
miRNA:   3'- -GGCuCUaCgUCGCGUAgUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 30911 0.67 0.726738
Target:  5'- gUCGGGAUGCaucgggcgGGCGCcgUGGCGCuuucGCCg -3'
miRNA:   3'- -GGCUCUACG--------UCGCGuaGUUGUGc---CGG- -5'
24919 3' -53.8 NC_005284.1 + 38666 0.68 0.716034
Target:  5'- aCCGAcgguAUGCA-UGgGUCGACGCGGCg -3'
miRNA:   3'- -GGCUc---UACGUcGCgUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 23586 0.72 0.447725
Target:  5'- gCGGGucgaGCGGUuCAUCGACGCGGCg -3'
miRNA:   3'- gGCUCua--CGUCGcGUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 9558 0.71 0.540763
Target:  5'- aCGAG--GCGGCGCAggCAGCGCucGCCa -3'
miRNA:   3'- gGCUCuaCGUCGCGUa-GUUGUGc-CGG- -5'
24919 3' -53.8 NC_005284.1 + 49312 0.71 0.540763
Target:  5'- cCCGAGGguaCGGCGaugGUUGGCACGGCa -3'
miRNA:   3'- -GGCUCUac-GUCGCg--UAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 45699 0.7 0.562384
Target:  5'- aCGA----CcGCGCGUCGACACGGCUg -3'
miRNA:   3'- gGCUcuacGuCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 39817 0.75 0.299619
Target:  5'- aCCGGGccgcGUGCcGCauuGCAUgGGCGCGGCCg -3'
miRNA:   3'- -GGCUC----UACGuCG---CGUAgUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 19402 0.7 0.572192
Target:  5'- aCGAGG-GCGGUGCAggcgugaUCGGCGC-GCCg -3'
miRNA:   3'- gGCUCUaCGUCGCGU-------AGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 457 0.72 0.437928
Target:  5'- gCGAGccgGCAGCGCcugGUCGGCGCaaaGCCg -3'
miRNA:   3'- gGCUCua-CGUCGCG---UAGUUGUGc--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.