Results 61 - 80 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24919 | 3' | -53.8 | NC_005284.1 | + | 50796 | 0.68 | 0.672497 |
Target: 5'- cCCGAaAUGCAccgaucGCGCAUCccggaguGCgAUGGCCg -3' miRNA: 3'- -GGCUcUACGU------CGCGUAGu------UG-UGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 23194 | 0.68 | 0.672497 |
Target: 5'- gUGAuGGcUGCAGCuGCGUCGACgACGGgCg -3' miRNA: 3'- gGCU-CU-ACGUCG-CGUAGUUG-UGCCgG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 40700 | 0.71 | 0.498431 |
Target: 5'- uCCGAGAUGCcaaGGCcuuGCAUUugacucGCGCgGGCCa -3' miRNA: 3'- -GGCUCUACG---UCG---CGUAGu-----UGUG-CCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 46577 | 0.71 | 0.495314 |
Target: 5'- gCCGAGcaugGCGGCGCAgugggCAACgccgaacgucccgaGCGGCg -3' miRNA: 3'- -GGCUCua--CGUCGCGUa----GUUG--------------UGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 37613 | 0.71 | 0.498431 |
Target: 5'- aCGGGGUGacgaucgaCAGCaGCAcgagaaaCAGCACGGCCg -3' miRNA: 3'- gGCUCUAC--------GUCG-CGUa------GUUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 30645 | 0.71 | 0.498431 |
Target: 5'- uCCGGGAauucguugugcgUGCGGC-CGUCgAGCAgcCGGCCg -3' miRNA: 3'- -GGCUCU------------ACGUCGcGUAG-UUGU--GCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 40618 | 0.71 | 0.539688 |
Target: 5'- gCCGAGGaauugaaUGUGGCGCAa-GGCGCGGUUa -3' miRNA: 3'- -GGCUCU-------ACGUCGCGUagUUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 9558 | 0.71 | 0.540763 |
Target: 5'- aCGAG--GCGGCGCAggCAGCGCucGCCa -3' miRNA: 3'- gGCUCuaCGUCGCGUa-GUUGUGc-CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 49312 | 0.71 | 0.540763 |
Target: 5'- cCCGAGGguaCGGCGaugGUUGGCACGGCa -3' miRNA: 3'- -GGCUCUac-GUCGCg--UAGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 9764 | 0.68 | 0.683467 |
Target: 5'- gUCGAGgcGaCGGCGCAagcUCAcgucgcaacgGCGCGcGCCa -3' miRNA: 3'- -GGCUCuaC-GUCGCGU---AGU----------UGUGC-CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 10519 | 0.68 | 0.683467 |
Target: 5'- gCCGAucagGCAGCGCucgAUCGAUuccucgcCGGCCu -3' miRNA: 3'- -GGCUcua-CGUCGCG---UAGUUGu------GCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 18404 | 0.67 | 0.737346 |
Target: 5'- gCGAGuggGUgaaGGUGcCGUCGACagGCGGCCu -3' miRNA: 3'- gGCUCua-CG---UCGC-GUAGUUG--UGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 6579 | 0.67 | 0.737346 |
Target: 5'- uCCGuGAcGaGGCGCGUaAGCGCGcGCCg -3' miRNA: 3'- -GGCuCUaCgUCGCGUAgUUGUGC-CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 30911 | 0.67 | 0.726738 |
Target: 5'- gUCGGGAUGCaucgggcgGGCGCcgUGGCGCuuucGCCg -3' miRNA: 3'- -GGCUCUACG--------UCGCGuaGUUGUGc---CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 38666 | 0.68 | 0.716034 |
Target: 5'- aCCGAcgguAUGCA-UGgGUCGACGCGGCg -3' miRNA: 3'- -GGCUc---UACGUcGCgUAGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 43376 | 0.68 | 0.716034 |
Target: 5'- gCGAucGAcGCAGCGCGUCAagucccGCGCuGUCg -3' miRNA: 3'- gGCU--CUaCGUCGCGUAGU------UGUGcCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 17886 | 0.68 | 0.716034 |
Target: 5'- gCCG-GAUcgGCgGGCGCAUCcGCgcaGCGGCUg -3' miRNA: 3'- -GGCuCUA--CG-UCGCGUAGuUG---UGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 6839 | 0.68 | 0.712806 |
Target: 5'- aCCGAGuugGCGcGCGCgAUCGAUcgugugcucggaggGCGGCg -3' miRNA: 3'- -GGCUCua-CGU-CGCG-UAGUUG--------------UGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 48968 | 0.68 | 0.705247 |
Target: 5'- aUCGAcGAaGCGGUGCu---GCGCGGCUg -3' miRNA: 3'- -GGCU-CUaCGUCGCGuaguUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 34730 | 0.68 | 0.683467 |
Target: 5'- cCCGAGAga-AGCGUuUCGAguuCGGCCu -3' miRNA: 3'- -GGCUCUacgUCGCGuAGUUgu-GCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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