miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 33997 0.69 0.632765
Target:  5'- -gGGGGUGCGgcgagggccgauucuGCGCGuUCGAgGCGGUCg -3'
miRNA:   3'- ggCUCUACGU---------------CGCGU-AGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34730 0.68 0.683467
Target:  5'- cCCGAGAga-AGCGUuUCGAguuCGGCCu -3'
miRNA:   3'- -GGCUCUacgUCGCGuAGUUgu-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 48968 0.68 0.705247
Target:  5'- aUCGAcGAaGCGGUGCu---GCGCGGCUg -3'
miRNA:   3'- -GGCU-CUaCGUCGCGuaguUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 6839 0.68 0.712806
Target:  5'- aCCGAGuugGCGcGCGCgAUCGAUcgugugcucggaggGCGGCg -3'
miRNA:   3'- -GGCUCua-CGU-CGCG-UAGUUG--------------UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 17886 0.68 0.716034
Target:  5'- gCCG-GAUcgGCgGGCGCAUCcGCgcaGCGGCUg -3'
miRNA:   3'- -GGCuCUA--CG-UCGCGUAGuUG---UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 43376 0.68 0.716034
Target:  5'- gCGAucGAcGCAGCGCGUCAagucccGCGCuGUCg -3'
miRNA:   3'- gGCU--CUaCGUCGCGUAGU------UGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 38666 0.68 0.716034
Target:  5'- aCCGAcgguAUGCA-UGgGUCGACGCGGCg -3'
miRNA:   3'- -GGCUc---UACGUcGCgUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 30911 0.67 0.726738
Target:  5'- gUCGGGAUGCaucgggcgGGCGCcgUGGCGCuuucGCCg -3'
miRNA:   3'- -GGCUCUACG--------UCGCGuaGUUGUGc---CGG- -5'
24919 3' -53.8 NC_005284.1 + 6579 0.67 0.737346
Target:  5'- uCCGuGAcGaGGCGCGUaAGCGCGcGCCg -3'
miRNA:   3'- -GGCuCUaCgUCGCGUAgUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 10519 0.68 0.683467
Target:  5'- gCCGAucagGCAGCGCucgAUCGAUuccucgcCGGCCu -3'
miRNA:   3'- -GGCUcua-CGUCGCG---UAGUUGu------GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9764 0.68 0.683467
Target:  5'- gUCGAGgcGaCGGCGCAagcUCAcgucgcaacgGCGCGcGCCa -3'
miRNA:   3'- -GGCUCuaC-GUCGCGU---AGU----------UGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 50796 0.68 0.672497
Target:  5'- cCCGAaAUGCAccgaucGCGCAUCccggaguGCgAUGGCCg -3'
miRNA:   3'- -GGCUcUACGU------CGCGUAGu------UG-UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31911 0.69 0.6394
Target:  5'- gCCGAccguCAGCGCGUCGuuauucGCAUGGUCg -3'
miRNA:   3'- -GGCUcuacGUCGCGUAGU------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 18127 0.69 0.6394
Target:  5'- gUGAGcGUGCAGgaaaGCGaCGACgACGGCCa -3'
miRNA:   3'- gGCUC-UACGUCg---CGUaGUUG-UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10381 0.69 0.647139
Target:  5'- uCUGAGcgGCuGCGCAcgaagcaagaggcgUCGcGgGCGGCCg -3'
miRNA:   3'- -GGCUCuaCGuCGCGU--------------AGU-UgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 46243 0.69 0.650453
Target:  5'- gUGGGAUGCGGaauggaCGCAUCuACGCGcGUCc -3'
miRNA:   3'- gGCUCUACGUC------GCGUAGuUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 27209 0.68 0.661489
Target:  5'- gCCGuuGGAcgucugcauacgUGCAGCGCGUCcACcacuCGGUCa -3'
miRNA:   3'- -GGC--UCU------------ACGUCGCGUAGuUGu---GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 49274 0.68 0.661489
Target:  5'- gCGAcGUGacgaAGCGCG-CuuCACGGCCg -3'
miRNA:   3'- gGCUcUACg---UCGCGUaGuuGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21924 0.68 0.672497
Target:  5'- gCGAcGAU-CAGCGCGagaUCGACaaacugACGGCCu -3'
miRNA:   3'- gGCU-CUAcGUCGCGU---AGUUG------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23194 0.68 0.672497
Target:  5'- gUGAuGGcUGCAGCuGCGUCGACgACGGgCg -3'
miRNA:   3'- gGCU-CU-ACGUCG-CGUAGUUG-UGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.