miRNA display CGI


Results 101 - 120 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 18404 0.67 0.737346
Target:  5'- gCGAGuggGUgaaGGUGcCGUCGACagGCGGCCu -3'
miRNA:   3'- gGCUCua-CG---UCGC-GUAGUUG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31042 0.67 0.747848
Target:  5'- gCUGuAGAUGUggaAGCGCAggUCAACcgacccaagcaGCGGCUc -3'
miRNA:   3'- -GGC-UCUACG---UCGCGU--AGUUG-----------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 53845 0.67 0.747848
Target:  5'- aCGGGGUGaucgcccgcCAGUucaGCAUCGAgcacaGCGGCCg -3'
miRNA:   3'- gGCUCUAC---------GUCG---CGUAGUUg----UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9873 0.67 0.747848
Target:  5'- gCGAGAcgGCAGcCGCA-CAGCAgGaGCUc -3'
miRNA:   3'- gGCUCUa-CGUC-GCGUaGUUGUgC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 11610 0.67 0.747848
Target:  5'- gCCGAGcgucagcgugacGUGCAGCGCGaacUCGGgGCGauGUCg -3'
miRNA:   3'- -GGCUC------------UACGUCGCGU---AGUUgUGC--CGG- -5'
24919 3' -53.8 NC_005284.1 + 34730 0.68 0.683467
Target:  5'- cCCGAGAga-AGCGUuUCGAguuCGGCCu -3'
miRNA:   3'- -GGCUCUacgUCGCGuAGUUgu-GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10519 0.68 0.683467
Target:  5'- gCCGAucagGCAGCGCucgAUCGAUuccucgcCGGCCu -3'
miRNA:   3'- -GGCUcua-CGUCGCG---UAGUUGu------GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9764 0.68 0.683467
Target:  5'- gUCGAGgcGaCGGCGCAagcUCAcgucgcaacgGCGCGcGCCa -3'
miRNA:   3'- -GGCUCuaC-GUCGCGU---AGU----------UGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 13877 0.7 0.599626
Target:  5'- gCCGAauUGCAGUGCAUCAACuACaacgcgacuucguuuGGCg -3'
miRNA:   3'- -GGCUcuACGUCGCGUAGUUG-UG---------------CCGg -5'
24919 3' -53.8 NC_005284.1 + 18192 0.69 0.606242
Target:  5'- gCCGGGGaaguacGCGGCG-AUCGACgACGGCg -3'
miRNA:   3'- -GGCUCUa-----CGUCGCgUAGUUG-UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 33997 0.69 0.632765
Target:  5'- -gGGGGUGCGgcgagggccgauucuGCGCGuUCGAgGCGGUCg -3'
miRNA:   3'- ggCUCUACGU---------------CGCGU-AGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 31911 0.69 0.6394
Target:  5'- gCCGAccguCAGCGCGUCGuuauucGCAUGGUCg -3'
miRNA:   3'- -GGCUcuacGUCGCGUAGU------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 18127 0.69 0.6394
Target:  5'- gUGAGcGUGCAGgaaaGCGaCGACgACGGCCa -3'
miRNA:   3'- gGCUC-UACGUCg---CGUaGUUG-UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10381 0.69 0.647139
Target:  5'- uCUGAGcgGCuGCGCAcgaagcaagaggcgUCGcGgGCGGCCg -3'
miRNA:   3'- -GGCUCuaCGuCGCGU--------------AGU-UgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 46243 0.69 0.650453
Target:  5'- gUGGGAUGCGGaauggaCGCAUCuACGCGcGUCc -3'
miRNA:   3'- gGCUCUACGUC------GCGUAGuUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 27209 0.68 0.661489
Target:  5'- gCCGuuGGAcgucugcauacgUGCAGCGCGUCcACcacuCGGUCa -3'
miRNA:   3'- -GGC--UCU------------ACGUCGCGUAGuUGu---GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 49274 0.68 0.661489
Target:  5'- gCGAcGUGacgaAGCGCG-CuuCACGGCCg -3'
miRNA:   3'- gGCUcUACg---UCGCGUaGuuGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21924 0.68 0.672497
Target:  5'- gCGAcGAU-CAGCGCGagaUCGACaaacugACGGCCu -3'
miRNA:   3'- gGCU-CUAcGUCGCGU---AGUUG------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23194 0.68 0.672497
Target:  5'- gUGAuGGcUGCAGCuGCGUCGACgACGGgCg -3'
miRNA:   3'- gGCU-CU-ACGUCG-CGUAGUUG-UGCCgG- -5'
24919 3' -53.8 NC_005284.1 + 50796 0.68 0.672497
Target:  5'- cCCGAaAUGCAccgaucGCGCAUCccggaguGCgAUGGCCg -3'
miRNA:   3'- -GGCUcUACGU------CGCGUAGu------UG-UGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.