miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 28908 0.67 0.768483
Target:  5'- aUCGAuGAUGCAcUGCAUCAua--GGCCc -3'
miRNA:   3'- -GGCU-CUACGUcGCGUAGUugugCCGG- -5'
24919 3' -53.8 NC_005284.1 + 23313 0.67 0.768483
Target:  5'- aUCGAuaguUGCuuGCGUGcUCGACACGGCUc -3'
miRNA:   3'- -GGCUcu--ACGu-CGCGU-AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 50103 0.67 0.758231
Target:  5'- aUCGAGAacguaacGCGGCG-AUCGcgcACGCGGCg -3'
miRNA:   3'- -GGCUCUa------CGUCGCgUAGU---UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 27627 0.67 0.758231
Target:  5'- -----cUGCAGCGC----ACGCGGCCa -3'
miRNA:   3'- ggcucuACGUCGCGuaguUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 1379 0.67 0.758231
Target:  5'- uUCGAGcAuuucgaucaccUGcCGGCGCuuGUCGaaGCACGGCCc -3'
miRNA:   3'- -GGCUC-U-----------AC-GUCGCG--UAGU--UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 16171 0.67 0.758231
Target:  5'- aUGGGGcuCGGCGCGUCGauggcGCugGGCg -3'
miRNA:   3'- gGCUCUacGUCGCGUAGU-----UGugCCGg -5'
24919 3' -53.8 NC_005284.1 + 9422 0.67 0.758231
Target:  5'- aUCGuGAaacuCGGCGUGUCGcuCGCGGCCg -3'
miRNA:   3'- -GGCuCUac--GUCGCGUAGUu-GUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9143 0.67 0.758231
Target:  5'- gUCGcGGAUGCuaucGCGCG-CGGCAUGGgCa -3'
miRNA:   3'- -GGC-UCUACGu---CGCGUaGUUGUGCCgG- -5'
24919 3' -53.8 NC_005284.1 + 22274 0.67 0.757198
Target:  5'- gCGGGAUGaugugguCAGCGaGUCGACGCuuGCCg -3'
miRNA:   3'- gGCUCUAC-------GUCGCgUAGUUGUGc-CGG- -5'
24919 3' -53.8 NC_005284.1 + 51330 0.67 0.755129
Target:  5'- uCCGAGGaaCAGCGCAaauggcucgggcaaUUGACcggauCGGCCg -3'
miRNA:   3'- -GGCUCUacGUCGCGU--------------AGUUGu----GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 45303 0.67 0.748892
Target:  5'- uUCGGuGAUcCAcGCGCucgaucucgugccguUCGACACGGCCg -3'
miRNA:   3'- -GGCU-CUAcGU-CGCGu--------------AGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11610 0.67 0.747848
Target:  5'- gCCGAGcgucagcgugacGUGCAGCGCGaacUCGGgGCGauGUCg -3'
miRNA:   3'- -GGCUC------------UACGUCGCGU---AGUUgUGC--CGG- -5'
24919 3' -53.8 NC_005284.1 + 31708 0.67 0.747848
Target:  5'- aCGAGGUGgAauGCGCccUCGACGCcGCCc -3'
miRNA:   3'- gGCUCUACgU--CGCGu-AGUUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 18353 0.67 0.747848
Target:  5'- gUCGAGAgGCGGaCGU-UCGACGgCGGCg -3'
miRNA:   3'- -GGCUCUaCGUC-GCGuAGUUGU-GCCGg -5'
24919 3' -53.8 NC_005284.1 + 53845 0.67 0.747848
Target:  5'- aCGGGGUGaucgcccgcCAGUucaGCAUCGAgcacaGCGGCCg -3'
miRNA:   3'- gGCUCUAC---------GUCG---CGUAGUUg----UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9873 0.67 0.747848
Target:  5'- gCGAGAcgGCAGcCGCA-CAGCAgGaGCUc -3'
miRNA:   3'- gGCUCUa-CGUC-GCGUaGUUGUgC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 31042 0.67 0.747848
Target:  5'- gCUGuAGAUGUggaAGCGCAggUCAACcgacccaagcaGCGGCUc -3'
miRNA:   3'- -GGC-UCUACG---UCGCGU--AGUUG-----------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9025 0.67 0.744709
Target:  5'- cCCGAGAUGCGaCGCGUUguuugcgauccgcuGAUACaGCUc -3'
miRNA:   3'- -GGCUCUACGUcGCGUAG--------------UUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 18404 0.67 0.737346
Target:  5'- gCGAGuggGUgaaGGUGcCGUCGACagGCGGCCu -3'
miRNA:   3'- gGCUCua-CG---UCGC-GUAGUUG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 6579 0.67 0.737346
Target:  5'- uCCGuGAcGaGGCGCGUaAGCGCGcGCCg -3'
miRNA:   3'- -GGCuCUaCgUCGCGUAgUUGUGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.