miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 5' -60 NC_005284.1 + 49365 0.66 0.481276
Target:  5'- -cGGUCGCagcuuCGcCGAGCGCGaGCUGg-- -3'
miRNA:   3'- guCCAGCGc----GC-GCUCGCGC-CGAUaga -5'
24919 5' -60 NC_005284.1 + 14829 0.66 0.481276
Target:  5'- uGGGaguaUCGCGgcccCGAGUGCGGCUAUa- -3'
miRNA:   3'- gUCC----AGCGCgc--GCUCGCGCCGAUAga -5'
24919 5' -60 NC_005284.1 + 15471 0.66 0.465539
Target:  5'- ---aUCGUGCGCGAcugguaucucgccgaGCGCGGC-GUCg -3'
miRNA:   3'- guccAGCGCGCGCU---------------CGCGCCGaUAGa -5'
24919 5' -60 NC_005284.1 + 8702 0.66 0.442446
Target:  5'- gCAGGUCacgguGCGCGCGcucGaCGCGGCgcgCa -3'
miRNA:   3'- -GUCCAG-----CGCGCGCu--C-GCGCCGauaGa -5'
24919 5' -60 NC_005284.1 + 16025 0.66 0.441498
Target:  5'- -cGGUCGgGCGCGAcgagauccgcauuGCGCcGGUaAUCg -3'
miRNA:   3'- guCCAGCgCGCGCU-------------CGCG-CCGaUAGa -5'
24919 5' -60 NC_005284.1 + 22247 0.66 0.433017
Target:  5'- gAGGuguUCGCGgGCGGG-GCGGCg--CUg -3'
miRNA:   3'- gUCC---AGCGCgCGCUCgCGCCGauaGA- -5'
24919 5' -60 NC_005284.1 + 41608 0.67 0.423705
Target:  5'- gAGGcCGCGC-CGAGUGCGaGCUccgacacgcAUCg -3'
miRNA:   3'- gUCCaGCGCGcGCUCGCGC-CGA---------UAGa -5'
24919 5' -60 NC_005284.1 + 27679 0.67 0.387695
Target:  5'- cCGGcGUgGCGCGCGGGuCGCcGCUGcCUg -3'
miRNA:   3'- -GUC-CAgCGCGCGCUC-GCGcCGAUaGA- -5'
24919 5' -60 NC_005284.1 + 11656 0.68 0.37046
Target:  5'- uGGGUgacaaCGCGCGCGAGCuGaaucaGGCcAUCa -3'
miRNA:   3'- gUCCA-----GCGCGCGCUCG-Cg----CCGaUAGa -5'
24919 5' -60 NC_005284.1 + 39818 0.68 0.345605
Target:  5'- cCGGGcCGCGUGCcgcauugcauGGGCGCGGCcgauguUCUc -3'
miRNA:   3'- -GUCCaGCGCGCG----------CUCGCGCCGau----AGA- -5'
24919 5' -60 NC_005284.1 + 47375 0.69 0.299563
Target:  5'- uCAGcUCGCGCGCGuugaucacgcGGCGaCGGCcGUCg -3'
miRNA:   3'- -GUCcAGCGCGCGC----------UCGC-GCCGaUAGa -5'
24919 5' -60 NC_005284.1 + 18763 0.7 0.278382
Target:  5'- -uGGUCGCGUcgucGCGAuucggcGUGCGGCUGUa- -3'
miRNA:   3'- guCCAGCGCG----CGCU------CGCGCCGAUAga -5'
24919 5' -60 NC_005284.1 + 45061 0.71 0.233623
Target:  5'- aAGcGUgGgCGgGCGAGCGCGGCUAc-- -3'
miRNA:   3'- gUC-CAgC-GCgCGCUCGCGCCGAUaga -5'
24919 5' -60 NC_005284.1 + 14696 0.72 0.185127
Target:  5'- gAGGUaGCGCGCGAGCGUucGGCg---- -3'
miRNA:   3'- gUCCAgCGCGCGCUCGCG--CCGauaga -5'
24919 5' -60 NC_005284.1 + 8959 0.75 0.114135
Target:  5'- -uGGUCGCGCGCGAuGCGCaGCacGUCg -3'
miRNA:   3'- guCCAGCGCGCGCU-CGCGcCGa-UAGa -5'
24919 5' -60 NC_005284.1 + 12145 0.75 0.114135
Target:  5'- -cGGUgGUGCgGCaAGCGCGGCUGUCg -3'
miRNA:   3'- guCCAgCGCG-CGcUCGCGCCGAUAGa -5'
24919 5' -60 NC_005284.1 + 11816 1.06 0.000538
Target:  5'- gCAGGUCGCGCGCGAGCGCGGCUAUCUc -3'
miRNA:   3'- -GUCCAGCGCGCGCUCGCGCCGAUAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.