miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 4793 0.66 0.532939
Target:  5'- aCGAacaaCGCAGCGGCaguaGCCGaagGCGCa -3'
miRNA:   3'- -GCUgc--GCGUCGUCGguagCGGC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 9677 0.66 0.532939
Target:  5'- gCGAUGCGCGaaAGCC-UUGC-GAUGCa -3'
miRNA:   3'- -GCUGCGCGUcgUCGGuAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 27584 0.66 0.532939
Target:  5'- uCGACGCGCc-CAucgaucaucGCCAcCGUgGGCGCa -3'
miRNA:   3'- -GCUGCGCGucGU---------CGGUaGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 9965 0.66 0.532939
Target:  5'- uCGGCGCGCugAGCuccuGCUGUgcggcUGCCGucuCGCg -3'
miRNA:   3'- -GCUGCGCG--UCGu---CGGUA-----GCGGCu--GCG- -5'
24920 3' -59.3 NC_005284.1 + 16178 0.66 0.532939
Target:  5'- uCGGCGCGUcgauggcgcugGGCGG-CAUCGUgcaGAUGCu -3'
miRNA:   3'- -GCUGCGCG-----------UCGUCgGUAGCGg--CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 19225 0.66 0.532939
Target:  5'- cCGugGCGCAGUccuacGCCgAUCugaaCgGACGCg -3'
miRNA:   3'- -GCugCGCGUCGu----CGG-UAGc---GgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 39998 0.66 0.532939
Target:  5'- uCGAaaaCGCAGCAGCCGaccUCGaaGucaGCGCa -3'
miRNA:   3'- -GCUgc-GCGUCGUCGGU---AGCggC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 45287 0.66 0.532939
Target:  5'- gCGGCuGCGCGGCauGGCUgaguaGCCGaAUGCg -3'
miRNA:   3'- -GCUG-CGCGUCG--UCGGuag--CGGC-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 49391 0.66 0.522661
Target:  5'- uGGCGCGCcgcacgggcaAGCAGCCGaacuccgaauUCGaCGAaauCGCa -3'
miRNA:   3'- gCUGCGCG----------UCGUCGGU----------AGCgGCU---GCG- -5'
24920 3' -59.3 NC_005284.1 + 23393 0.66 0.522661
Target:  5'- uGAUGCaacGCAGUu-CCGUCGaCGACGCc -3'
miRNA:   3'- gCUGCG---CGUCGucGGUAGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 53582 0.66 0.522661
Target:  5'- gGGCGUGCggcuguGGCGGUCAUCGaguucaugCGACuGCa -3'
miRNA:   3'- gCUGCGCG------UCGUCGGUAGCg-------GCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 21125 0.66 0.522661
Target:  5'- aGACGUGUAcGCgGGCCAgCGCUucACGCg -3'
miRNA:   3'- gCUGCGCGU-CG-UCGGUaGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 21012 0.66 0.522661
Target:  5'- aGGCGUGCAGCgAGCUcgAUCuGCucuCGACGa -3'
miRNA:   3'- gCUGCGCGUCG-UCGG--UAG-CG---GCUGCg -5'
24920 3' -59.3 NC_005284.1 + 34371 0.66 0.522661
Target:  5'- uGAUGCGCuGacggacgAGCaCAUCGC-GACGCu -3'
miRNA:   3'- gCUGCGCGuCg------UCG-GUAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 6392 0.66 0.522661
Target:  5'- aCGACauuGCuGCAGUgcuGCCGaaUCGCCGGCa- -3'
miRNA:   3'- -GCUG---CG-CGUCGu--CGGU--AGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 12833 0.66 0.522661
Target:  5'- uCGAUGauCGCGGCAaCCuUCGCCG-CGUu -3'
miRNA:   3'- -GCUGC--GCGUCGUcGGuAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 21642 0.66 0.522661
Target:  5'- uCGAacgccCGCGCGGCcuGCuCGUCggcaaGCCGAUGUg -3'
miRNA:   3'- -GCU-----GCGCGUCGu-CG-GUAG-----CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31449 0.66 0.520615
Target:  5'- gCGGCGCGCcgGGCccccaauugaccGCCGUgcCGCCGgaaaaGCGCg -3'
miRNA:   3'- -GCUGCGCG--UCGu-----------CGGUA--GCGGC-----UGCG- -5'
24920 3' -59.3 NC_005284.1 + 21666 0.66 0.512462
Target:  5'- aCGAUGCcgccgcgucgGCGGUGGCCGcCGUCGAC-Ca -3'
miRNA:   3'- -GCUGCG----------CGUCGUCGGUaGCGGCUGcG- -5'
24920 3' -59.3 NC_005284.1 + 48445 0.66 0.512462
Target:  5'- -cGCGUGCAGUgcaguaccAGCU-UCGCCgGAUGCa -3'
miRNA:   3'- gcUGCGCGUCG--------UCGGuAGCGG-CUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.