miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 12384 0.66 0.492316
Target:  5'- gCGGgaGCGCGGgAGgaggggauUCGCCGGCGCg -3'
miRNA:   3'- -GCUg-CGCGUCgUCggu-----AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 6392 0.66 0.522661
Target:  5'- aCGACauuGCuGCAGUgcuGCCGaaUCGCCGGCa- -3'
miRNA:   3'- -GCUG---CG-CGUCGu--CGGU--AGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 29863 0.66 0.48238
Target:  5'- cCGACGCaucucGCGaUGGUCggCGCCGGCGUg -3'
miRNA:   3'- -GCUGCG-----CGUcGUCGGuaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 23781 0.66 0.502344
Target:  5'- aGACGaGCAGauUAGCCGcaUCGUCGAucCGCu -3'
miRNA:   3'- gCUGCgCGUC--GUCGGU--AGCGGCU--GCG- -5'
24920 3' -59.3 NC_005284.1 + 31449 0.66 0.520615
Target:  5'- gCGGCGCGCcgGGCccccaauugaccGCCGUgcCGCCGgaaaaGCGCg -3'
miRNA:   3'- -GCUGCGCG--UCGu-----------CGGUA--GCGGC-----UGCG- -5'
24920 3' -59.3 NC_005284.1 + 33043 0.66 0.512462
Target:  5'- -cGCGCacugGCGGCAcacaCCAUCGCCGuucucguacACGCa -3'
miRNA:   3'- gcUGCG----CGUCGUc---GGUAGCGGC---------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 48445 0.66 0.512462
Target:  5'- -cGCGUGCAGUgcaguaccAGCU-UCGCCgGAUGCa -3'
miRNA:   3'- gcUGCGCGUCG--------UCGGuAGCGG-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 1690 0.66 0.485351
Target:  5'- uCGACGgGCGGCGGCauuacuucugcguugCGCCG-CGa -3'
miRNA:   3'- -GCUGCgCGUCGUCGgua------------GCGGCuGCg -5'
24920 3' -59.3 NC_005284.1 + 46197 0.66 0.512462
Target:  5'- cCGaACGCGCAGCcucccgAGUCGugggagaacUgGCCGACcGCg -3'
miRNA:   3'- -GC-UGCGCGUCG------UCGGU---------AgCGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 12289 0.66 0.502344
Target:  5'- aGugGUGUcGCAGCCGggCGUgcGCGCa -3'
miRNA:   3'- gCugCGCGuCGUCGGUa-GCGgcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 33949 0.66 0.48238
Target:  5'- gGAaGCGCcGCccGCuCGUCgGCCGGCGCu -3'
miRNA:   3'- gCUgCGCGuCGu-CG-GUAG-CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45067 0.66 0.491318
Target:  5'- gGGCGgGCGagcGCGGCUacgcgcucgugaaGUUGCCGAgCGCc -3'
miRNA:   3'- gCUGCgCGU---CGUCGG-------------UAGCGGCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 21125 0.66 0.522661
Target:  5'- aGACGUGUAcGCgGGCCAgCGCUucACGCg -3'
miRNA:   3'- gCUGCGCGU-CG-UCGGUaGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 21666 0.66 0.512462
Target:  5'- aCGAUGCcgccgcgucgGCGGUGGCCGcCGUCGAC-Ca -3'
miRNA:   3'- -GCUGCG----------CGUCGUCGGUaGCGGCUGcG- -5'
24920 3' -59.3 NC_005284.1 + 25581 0.66 0.512462
Target:  5'- cCGucCGCGCGGCGGU---UGCCGACu- -3'
miRNA:   3'- -GCu-GCGCGUCGUCGguaGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 25698 0.66 0.492316
Target:  5'- -uGCGUGCAGCAGCCAguaaGCuCGGu-- -3'
miRNA:   3'- gcUGCGCGUCGUCGGUag--CG-GCUgcg -5'
24920 3' -59.3 NC_005284.1 + 16753 0.66 0.502344
Target:  5'- uGACuGCGguGCGcgugcGCUucggugUGCCGGCGCu -3'
miRNA:   3'- gCUG-CGCguCGU-----CGGua----GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37086 0.66 0.512462
Target:  5'- uCGACGCGcCGGCgagauucaGGgCGUCGCgcaCGAuCGCg -3'
miRNA:   3'- -GCUGCGC-GUCG--------UCgGUAGCG---GCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 16869 0.66 0.48238
Target:  5'- uCGuAUGCGCAGguGCUg--GCCGGUGCg -3'
miRNA:   3'- -GC-UGCGCGUCguCGGuagCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37031 0.66 0.492316
Target:  5'- uCGACGCGCuGCuguaguGCCGccUUGCCccugccguaGACGUc -3'
miRNA:   3'- -GCUGCGCGuCGu-----CGGU--AGCGG---------CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.