miRNA display CGI


Results 41 - 60 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 12289 0.66 0.502344
Target:  5'- aGugGUGUcGCAGCCGggCGUgcGCGCa -3'
miRNA:   3'- gCugCGCGuCGUCGGUa-GCGgcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37031 0.66 0.492316
Target:  5'- uCGACGCGCuGCuguaguGCCGccUUGCCccugccguaGACGUc -3'
miRNA:   3'- -GCUGCGCGuCGu-----CGGU--AGCGG---------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 12384 0.66 0.492316
Target:  5'- gCGGgaGCGCGGgAGgaggggauUCGCCGGCGCg -3'
miRNA:   3'- -GCUg-CGCGUCgUCggu-----AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 9750 0.67 0.434254
Target:  5'- cCGAaGCGCgGGCGGUCGagGCgaCGGCGCa -3'
miRNA:   3'- -GCUgCGCG-UCGUCGGUagCG--GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 46476 0.67 0.434254
Target:  5'- cCGACGCugGCguuAGCuGCucgugCAUgGCCGACGCc -3'
miRNA:   3'- -GCUGCG--CG---UCGuCG-----GUAgCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 18476 0.67 0.424966
Target:  5'- --uCGCGCGGguGCg--CGCCGAgaaCGCg -3'
miRNA:   3'- gcuGCGCGUCguCGguaGCGGCU---GCG- -5'
24920 3' -59.3 NC_005284.1 + 6661 0.67 0.424966
Target:  5'- aGACGCGCcgGGUuuGGCgAcgGCCGGCGUa -3'
miRNA:   3'- gCUGCGCG--UCG--UCGgUagCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 4482 0.67 0.424966
Target:  5'- uGGCuCGCGGCGGCgGUagCGCCGAacucgaaaCGCc -3'
miRNA:   3'- gCUGcGCGUCGUCGgUA--GCGGCU--------GCG- -5'
24920 3' -59.3 NC_005284.1 + 54535 0.67 0.422202
Target:  5'- gCGcCGCGaCAGCGGCCucuGUCaGCCcuguuugcaagcagGGCGCg -3'
miRNA:   3'- -GCuGCGC-GUCGUCGG---UAG-CGG--------------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 27685 0.67 0.442714
Target:  5'- uGGCGCGCGGgucGCCGcUGCCugauuccGGCGCg -3'
miRNA:   3'- gCUGCGCGUCgu-CGGUaGCGG-------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 6941 0.67 0.453179
Target:  5'- uCGGCGuCGCAcCGGagaaggCGCCGGCGCc -3'
miRNA:   3'- -GCUGC-GCGUcGUCggua--GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37707 0.67 0.453179
Target:  5'- gGGCGCGCAuacgGGCCGcccCGCCGAaaggcCGCg -3'
miRNA:   3'- gCUGCGCGUcg--UCGGUa--GCGGCU-----GCG- -5'
24920 3' -59.3 NC_005284.1 + 8776 0.67 0.472543
Target:  5'- uCGGCGUGCAuCAGUUgaucgaGUaCGCCGACGa -3'
miRNA:   3'- -GCUGCGCGUcGUCGG------UA-GCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 34266 0.67 0.472543
Target:  5'- -uGCGCGC-GCAGCCAguuucagcgUCG-CGAUGUg -3'
miRNA:   3'- gcUGCGCGuCGUCGGU---------AGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 26554 0.67 0.472543
Target:  5'- gGGCGgGCAGUAG--GUgGCCGGCGa -3'
miRNA:   3'- gCUGCgCGUCGUCggUAgCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 47962 0.67 0.462808
Target:  5'- cCGACGaGCAGgGGaauugcgauCCGUCGaUCGACGCc -3'
miRNA:   3'- -GCUGCgCGUCgUC---------GGUAGC-GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 22914 0.67 0.447454
Target:  5'- aCGAUGCgGC-GCAGCCAgucgggcuguucugaUCGaUUGGCGCg -3'
miRNA:   3'- -GCUGCG-CGuCGUCGGU---------------AGC-GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 47621 0.67 0.462808
Target:  5'- uCGcACGCGCugaAGCuugcgaAGCUGUCGCCcGACGa -3'
miRNA:   3'- -GC-UGCGCG---UCG------UCGGUAGCGG-CUGCg -5'
24920 3' -59.3 NC_005284.1 + 53881 0.67 0.46184
Target:  5'- gCGGcCGgGaugGGCGGCCGUCGUCGcuugccuuggccuGCGCg -3'
miRNA:   3'- -GCU-GCgCg--UCGUCGGUAGCGGC-------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 30889 0.67 0.457017
Target:  5'- gGuCGCGCAGCgaccgAGCCcagucgggaugcaucGggcgggCGCCGugGCg -3'
miRNA:   3'- gCuGCGCGUCG-----UCGG---------------Ua-----GCGGCugCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.