miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 8776 0.67 0.472543
Target:  5'- uCGGCGUGCAuCAGUUgaucgaGUaCGCCGACGa -3'
miRNA:   3'- -GCUGCGCGUcGUCGG------UA-GCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 33079 0.67 0.453179
Target:  5'- --cCGgGCAGCAG-CAUCGCCcGCuGCg -3'
miRNA:   3'- gcuGCgCGUCGUCgGUAGCGGcUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 42883 0.67 0.453179
Target:  5'- aCGAUG-GCcGCuGCUAUCacguagaauGCCGGCGCg -3'
miRNA:   3'- -GCUGCgCGuCGuCGGUAG---------CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17795 0.67 0.453179
Target:  5'- gCGACGUGCAGCcgaacGCCGUgaccucCGUCuugauGACGCc -3'
miRNA:   3'- -GCUGCGCGUCGu----CGGUA------GCGG-----CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 23435 0.67 0.453179
Target:  5'- uCG-UGCGUAG-GGCCAaCGCCGcCGCu -3'
miRNA:   3'- -GCuGCGCGUCgUCGGUaGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 26376 0.67 0.462808
Target:  5'- uCGcACGCGCcGCAGUgccuUAUCGaggaCGACGUa -3'
miRNA:   3'- -GC-UGCGCGuCGUCG----GUAGCg---GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45182 0.67 0.453179
Target:  5'- -aGCGuCGCAGCAGUCAacggCGCuCGGCa- -3'
miRNA:   3'- gcUGC-GCGUCGUCGGUa---GCG-GCUGcg -5'
24920 3' -59.3 NC_005284.1 + 11935 0.67 0.451266
Target:  5'- cCGACGCGcCAGuCGGCCugcaacgcgaGCCGcUGCu -3'
miRNA:   3'- -GCUGCGC-GUC-GUCGGuag-------CGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 7764 0.67 0.44366
Target:  5'- -cACGCGCAcGCuGUaCGUCGCCGAaaucaGCc -3'
miRNA:   3'- gcUGCGCGU-CGuCG-GUAGCGGCUg----CG- -5'
24920 3' -59.3 NC_005284.1 + 8668 0.67 0.43332
Target:  5'- aGAcCGCGCaugcGGCGGUCGuauucggucguauUCGCCGuaACGCu -3'
miRNA:   3'- gCU-GCGCG----UCGUCGGU-------------AGCGGC--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 25316 0.67 0.43332
Target:  5'- uGGCGUcaucgucGgAGCAGUCAcagUCGCCGGgGCc -3'
miRNA:   3'- gCUGCG-------CgUCGUCGGU---AGCGGCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 48981 0.67 0.424966
Target:  5'- aGGCgGCGCAGCGacaCCuUCGCCGccggGCGUg -3'
miRNA:   3'- gCUG-CGCGUCGUc--GGuAGCGGC----UGCG- -5'
24920 3' -59.3 NC_005284.1 + 25027 0.67 0.472543
Target:  5'- aGACGCGgAGC-GCaugAUCGgCGACGg -3'
miRNA:   3'- gCUGCGCgUCGuCGg--UAGCgGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 16378 0.67 0.472543
Target:  5'- uGACGaGCGGCA-CCGgcUCGCCcuGCGCa -3'
miRNA:   3'- gCUGCgCGUCGUcGGU--AGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 31983 0.67 0.476466
Target:  5'- aCGACGCGCuGaCGGUCGgcgaaugucaggugaUCaGCCG-CGCa -3'
miRNA:   3'- -GCUGCGCGuC-GUCGGU---------------AG-CGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 21906 0.67 0.453179
Target:  5'- cCGGCgGCGCuggaagcgccgGGCAcGCCGUCGCCaccGGCuGCc -3'
miRNA:   3'- -GCUG-CGCG-----------UCGU-CGGUAGCGG---CUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 16690 0.68 0.415797
Target:  5'- cCGGCGU-CGGCGuGCCGcugaCGuCCGACGCg -3'
miRNA:   3'- -GCUGCGcGUCGU-CGGUa---GC-GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31663 0.68 0.415797
Target:  5'- -----gGCAGCGGCuCAUUGCCGcuGCGCc -3'
miRNA:   3'- gcugcgCGUCGUCG-GUAGCGGC--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 45557 0.68 0.415797
Target:  5'- cCGcCGCGUGGCG--CGUCGCCcGCGCa -3'
miRNA:   3'- -GCuGCGCGUCGUcgGUAGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 19797 0.68 0.415797
Target:  5'- aCGGCaGCGCGGCGGCagAUCuCUcGCGCg -3'
miRNA:   3'- -GCUG-CGCGUCGUCGg-UAGcGGcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.