miRNA display CGI


Results 81 - 100 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 21348 0.68 0.40675
Target:  5'- aGGCGCGCGGCccgauguuguaGGCgaagcuCAcCGCCGcCGCg -3'
miRNA:   3'- gCUGCGCGUCG-----------UCG------GUaGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 38800 0.68 0.40675
Target:  5'- cCGGCGC-CAuGCAGCgCAUUgaGCCGGCaGCc -3'
miRNA:   3'- -GCUGCGcGU-CGUCG-GUAG--CGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 8206 0.68 0.397827
Target:  5'- aCGACGaUGCGGUugugcacggGGCCGaaCGCCGcCGCg -3'
miRNA:   3'- -GCUGC-GCGUCG---------UCGGUa-GCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 45557 0.68 0.415797
Target:  5'- cCGcCGCGUGGCG--CGUCGCCcGCGCa -3'
miRNA:   3'- -GCuGCGCGUCGUcgGUAGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31663 0.68 0.415797
Target:  5'- -----gGCAGCGGCuCAUUGCCGcuGCGCc -3'
miRNA:   3'- gcugcgCGUCGUCG-GUAGCGGC--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 454 0.68 0.40675
Target:  5'- cCGGCGagccgGCAGC-GCC-UgGUCGGCGCa -3'
miRNA:   3'- -GCUGCg----CGUCGuCGGuAgCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 50120 0.68 0.40675
Target:  5'- gCGAuCGCGCAcGCGGCguUCGCC-AUGg -3'
miRNA:   3'- -GCU-GCGCGU-CGUCGguAGCGGcUGCg -5'
24920 3' -59.3 NC_005284.1 + 332 0.68 0.40675
Target:  5'- uGACuCGCAaCGGCCcuGUCGUCGACaGCu -3'
miRNA:   3'- gCUGcGCGUcGUCGG--UAGCGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 18843 0.68 0.40675
Target:  5'- gGGCGUGCAGgGGCa---GCCGA-GCa -3'
miRNA:   3'- gCUGCGCGUCgUCGguagCGGCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 8917 0.68 0.397827
Target:  5'- uCGACGCGaCAGCcgAGCUGUaucaGCgGAuCGCa -3'
miRNA:   3'- -GCUGCGC-GUCG--UCGGUAg---CGgCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 39463 0.68 0.395175
Target:  5'- gGGUGCGguGCuguGCCAUCGUCuuucuccuguagcgGGCGCg -3'
miRNA:   3'- gCUGCGCguCGu--CGGUAGCGG--------------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 971 0.68 0.389031
Target:  5'- cCGGCGCGacgacugaaaAGCAgGCCuggaggucuuUCGCCcGGCGCg -3'
miRNA:   3'- -GCUGCGCg---------UCGU-CGGu---------AGCGG-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 11806 0.68 0.389031
Target:  5'- cCGAgGCGgAGCAGgUcgCGCgCGAgCGCg -3'
miRNA:   3'- -GCUgCGCgUCGUCgGuaGCG-GCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 47904 0.68 0.380364
Target:  5'- --uUGCGCgAGCAGUUccCGCCGACGg -3'
miRNA:   3'- gcuGCGCG-UCGUCGGuaGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 7712 0.68 0.380364
Target:  5'- gCGGUGCGCcgaAGCucguGCCGcCGCCGGCGg -3'
miRNA:   3'- -GCUGCGCG---UCGu---CGGUaGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 16446 0.68 0.380364
Target:  5'- gGugGCgGUGGCAGCagugaAUCGCcCGACaGCc -3'
miRNA:   3'- gCugCG-CGUCGUCGg----UAGCG-GCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 35589 0.68 0.371827
Target:  5'- uCGuCGCGCugcggagacucaGGCAGCCugucgacagCGCCGACa- -3'
miRNA:   3'- -GCuGCGCG------------UCGUCGGua-------GCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 37879 0.68 0.397827
Target:  5'- gGGCGCGUGGCGGauuUGUgGCCaACGCa -3'
miRNA:   3'- gCUGCGCGUCGUCg--GUAgCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 30206 0.68 0.397827
Target:  5'- -cGCGCGCGGCGuGCa---GUCGACGUg -3'
miRNA:   3'- gcUGCGCGUCGU-CGguagCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 19797 0.68 0.415797
Target:  5'- aCGGCaGCGCGGCGGCagAUCuCUcGCGCg -3'
miRNA:   3'- -GCUG-CGCGUCGUCGg-UAGcGGcUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.