miRNA display CGI


Results 1 - 20 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 14512 1.11 0.000311
Target:  5'- cCGACGCGCAGCAGCCAUCGCCGACGCu -3'
miRNA:   3'- -GCUGCGCGUCGUCGGUAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 21585 0.81 0.054411
Target:  5'- uCGACGCGCAGCGGCa--UGCCGAaGCg -3'
miRNA:   3'- -GCUGCGCGUCGUCGguaGCGGCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 21636 0.79 0.078335
Target:  5'- uCGACGCcgaGCAGCGuGCgAUCGCCG-CGCa -3'
miRNA:   3'- -GCUGCG---CGUCGU-CGgUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 21767 0.78 0.089995
Target:  5'- uCGugGUucguuggucGaCGGCGGCCAcCGCCGACGCg -3'
miRNA:   3'- -GCugCG---------C-GUCGUCGGUaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 27007 0.78 0.089995
Target:  5'- aCGACGCGCcGCccGGCgCAUCGCCGAaaucaguccCGCa -3'
miRNA:   3'- -GCUGCGCGuCG--UCG-GUAGCGGCU---------GCG- -5'
24920 3' -59.3 NC_005284.1 + 17840 0.78 0.092518
Target:  5'- gCGACGUcaGCAGCAGCCAgcgcccgaGCCGGUGCg -3'
miRNA:   3'- -GCUGCG--CGUCGUCGGUag------CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16779 0.78 0.080545
Target:  5'- aCGGCGCGUcggacgucAGCGGCa--CGCCGACGCc -3'
miRNA:   3'- -GCUGCGCG--------UCGUCGguaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16991 0.76 0.118421
Target:  5'- cCGaACGCGCAcacgGCGaCgAUCGCCGACGCg -3'
miRNA:   3'- -GC-UGCGCGU----CGUcGgUAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31514 0.76 0.115239
Target:  5'- cCGGCGCGCcGCAGCggcgcaCGUCGCCcgcgaacuGGCGCa -3'
miRNA:   3'- -GCUGCGCGuCGUCG------GUAGCGG--------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 10736 0.76 0.115239
Target:  5'- gCGGCGCGCAccaguuccucgcGCAGCgCuUCGCCGcCGCu -3'
miRNA:   3'- -GCUGCGCGU------------CGUCG-GuAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 10216 0.76 0.112136
Target:  5'- cCGuACGCGCgAGCGccgucugcGCCGUCGCCG-CGCu -3'
miRNA:   3'- -GC-UGCGCG-UCGU--------CGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 26345 0.76 0.121685
Target:  5'- ---aGCGCGGCacGGUCAaCGCCGGCGCg -3'
miRNA:   3'- gcugCGCGUCG--UCGGUaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 33346 0.75 0.150952
Target:  5'- aGcACGCGCGGCAG-CAUCGCCcACuGCg -3'
miRNA:   3'- gC-UGCGCGUCGUCgGUAGCGGcUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 49046 0.75 0.131986
Target:  5'- aGcCGCGCAGCA-CCGcuUCGUCGAUGCa -3'
miRNA:   3'- gCuGCGCGUCGUcGGU--AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 18992 0.75 0.135594
Target:  5'- -cGCGCGCAGCuccguGCCAagCGCCGACu- -3'
miRNA:   3'- gcUGCGCGUCGu----CGGUa-GCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 30665 0.75 0.142702
Target:  5'- gCGGC-CGUcgAGCAGCCGgccggcggcuuucUUGCCGACGCg -3'
miRNA:   3'- -GCUGcGCG--UCGUCGGU-------------AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31205 0.75 0.146971
Target:  5'- cCGAucuCGCGUAGCAucGCCgcgacGUUGCCGAUGCg -3'
miRNA:   3'- -GCU---GCGCGUCGU--CGG-----UAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 12755 0.74 0.163491
Target:  5'- gCGGCcCGCuggguGUAGCCGUCGCCGaacugggcuuuGCGCa -3'
miRNA:   3'- -GCUGcGCGu----CGUCGGUAGCGGC-----------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 21929 0.74 0.15921
Target:  5'- aGGCG-GCGGCA-CCAUCGCCcACGCc -3'
miRNA:   3'- gCUGCgCGUCGUcGGUAGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 25517 0.74 0.163491
Target:  5'- gGugGaauCGgAGCGGCCGUCGUCGuGCGCg -3'
miRNA:   3'- gCugC---GCgUCGUCGGUAGCGGC-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.