miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 48493 0.7 0.308334
Target:  5'- uGGCGCGUcuucGCAGCCAacUUuUCGACGCu -3'
miRNA:   3'- gCUGCGCGu---CGUCGGU--AGcGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 23279 0.7 0.308334
Target:  5'- aGGCGCGCGGUgccgauaucGGCguguaucccggCGUCGUCGACGg -3'
miRNA:   3'- gCUGCGCGUCG---------UCG-----------GUAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 9561 0.7 0.315798
Target:  5'- aGGCgGCGCAgGCAGCgcUCGCCaaaGCGCa -3'
miRNA:   3'- gCUG-CGCGU-CGUCGguAGCGGc--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 23215 0.7 0.315798
Target:  5'- aCGACGgGCGGUggAGCCGU-GUCGAgcaCGCa -3'
miRNA:   3'- -GCUGCgCGUCG--UCGGUAgCGGCU---GCG- -5'
24920 3' -59.3 NC_005284.1 + 15705 0.7 0.293812
Target:  5'- gGAucUGCauCAGCAGCaCGUCGCCGACcuGCa -3'
miRNA:   3'- gCU--GCGc-GUCGUCG-GUAGCGGCUG--CG- -5'
24920 3' -59.3 NC_005284.1 + 21822 0.7 0.293812
Target:  5'- aCGGCGUGCccGGCGcuuCCAgcgcCGCCGGCGUg -3'
miRNA:   3'- -GCUGCGCG--UCGUc--GGUa---GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 22626 0.7 0.306121
Target:  5'- uCGAUGCGCAGCAGguucaggcccggcaCCGUaGUCGuCGCc -3'
miRNA:   3'- -GCUGCGCGUCGUC--------------GGUAgCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 31423 0.7 0.308334
Target:  5'- cCGACaGCGCGuguucuGCGcGUCGcUCGCCGACGUu -3'
miRNA:   3'- -GCUG-CGCGU------CGU-CGGU-AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17081 0.7 0.293812
Target:  5'- uGAuCGCGuCGGCGaUCGUCGCCGuguGCGCg -3'
miRNA:   3'- gCU-GCGC-GUCGUcGGUAGCGGC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 9671 0.7 0.286754
Target:  5'- uCGcCGcCGCGGCAGCgCgAUCGCCcuGCGCu -3'
miRNA:   3'- -GCuGC-GCGUCGUCG-G-UAGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 15950 0.7 0.286055
Target:  5'- uCGGCGCGCGacGcCGGCCcacguUCGCCGuguucaacggccgGCGCa -3'
miRNA:   3'- -GCUGCGCGU--C-GUCGGu----AGCGGC-------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 43944 0.69 0.323398
Target:  5'- aCGACGCGCGGa--UCAUCaaCGGCGCg -3'
miRNA:   3'- -GCUGCGCGUCgucGGUAGcgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 1223 0.69 0.33821
Target:  5'- gGGCGCGCgccGGCAGCCGcucauguucaucaUCacgacuGCgGGCGCg -3'
miRNA:   3'- gCUGCGCG---UCGUCGGU-------------AG------CGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 53657 0.69 0.363421
Target:  5'- aCGACuGUGCAgGCGGCaacucgaucaaGUCGUCGACGg -3'
miRNA:   3'- -GCUG-CGCGU-CGUCGg----------UAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 11053 0.69 0.363421
Target:  5'- uGACGCGCG--AGCUcgCGCUGAUGa -3'
miRNA:   3'- gCUGCGCGUcgUCGGuaGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 6756 0.69 0.363421
Target:  5'- uCGGCaCGCAGCacaugaaggcucAGCCGUUcaugcgGCCGGCGUu -3'
miRNA:   3'- -GCUGcGCGUCG------------UCGGUAG------CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 8376 0.69 0.355148
Target:  5'- uGAuCGCgGCGGCGGCguuucaGUCGCagGGCGCa -3'
miRNA:   3'- gCU-GCG-CGUCGUCGg-----UAGCGg-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 54462 0.69 0.347008
Target:  5'- cCGACGCGguGCgcGGCaAUCGUCauGCGCg -3'
miRNA:   3'- -GCUGCGCguCG--UCGgUAGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 41596 0.69 0.331133
Target:  5'- aCGuACGCGC-GCgaGGCCG-CGCCGAgUGCg -3'
miRNA:   3'- -GC-UGCGCGuCG--UCGGUaGCGGCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 10163 0.69 0.323398
Target:  5'- aGACcCGCcGCGGUCgcgGUCGCCG-CGCg -3'
miRNA:   3'- gCUGcGCGuCGUCGG---UAGCGGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.