Results 21 - 40 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24920 | 3' | -59.3 | NC_005284.1 | + | 12755 | 0.74 | 0.163491 |
Target: 5'- gCGGCcCGCuggguGUAGCCGUCGCCGaacugggcuuuGCGCa -3' miRNA: 3'- -GCUGcGCGu----CGUCGGUAGCGGC-----------UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 25517 | 0.74 | 0.163491 |
Target: 5'- gGugGaauCGgAGCGGCCGUCGUCGuGCGCg -3' miRNA: 3'- gCugC---GCgUCGUCGGUAGCGGC-UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 23269 | 0.74 | 0.167874 |
Target: 5'- uCGACGCaGCuGCAGCCAUCacacgaGCgGaACGCg -3' miRNA: 3'- -GCUGCG-CGuCGUCGGUAG------CGgC-UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 17008 | 0.74 | 0.167874 |
Target: 5'- -uGCGCGCGGCAGC--UCGauCCGAUGCg -3' miRNA: 3'- gcUGCGCGUCGUCGguAGC--GGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 10425 | 0.73 | 0.181662 |
Target: 5'- uGACGCGCAGuCGGCaUAUCGgaauuuggCGACGCg -3' miRNA: 3'- gCUGCGCGUC-GUCG-GUAGCg-------GCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 37373 | 0.73 | 0.191403 |
Target: 5'- uCGACGUugacGCcGCGGUCGUCGCCGuaGCGUu -3' miRNA: 3'- -GCUGCG----CGuCGUCGGUAGCGGC--UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 32760 | 0.73 | 0.196443 |
Target: 5'- uGGCGCuuGCGGUccgcuGGCCccCGCCGAUGCg -3' miRNA: 3'- gCUGCG--CGUCG-----UCGGuaGCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 19727 | 0.73 | 0.196443 |
Target: 5'- uCGcACGCGaAGCAcGCCGUUGCCGuCGUa -3' miRNA: 3'- -GC-UGCGCgUCGU-CGGUAGCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 10929 | 0.73 | 0.201599 |
Target: 5'- uGAUGCGCAGgcccgcauggcCGGCCucGUCGCCGGacgaGCg -3' miRNA: 3'- gCUGCGCGUC-----------GUCGG--UAGCGGCUg---CG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 9923 | 0.73 | 0.201599 |
Target: 5'- gCGcuCGCGCAGCAGCgG-CGUaCGGCGCu -3' miRNA: 3'- -GCu-GCGCGUCGUCGgUaGCG-GCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 48205 | 0.73 | 0.205277 |
Target: 5'- --uCGCGCAGCGGCCAcgCGUacgugucugucaugUGGCGCa -3' miRNA: 3'- gcuGCGCGUCGUCGGUa-GCG--------------GCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 31344 | 0.73 | 0.205808 |
Target: 5'- gCGACGCGCagaacacgcgcugucGGUGGCCGUggauugcauagaacgCGCCGuCGCg -3' miRNA: 3'- -GCUGCGCG---------------UCGUCGGUA---------------GCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 11247 | 0.73 | 0.206872 |
Target: 5'- -cGCGCGCGGCGGCCG----CGGCGCg -3' miRNA: 3'- gcUGCGCGUCGUCGGUagcgGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 26931 | 0.73 | 0.206872 |
Target: 5'- gCGAUGCGCcgGGCGGgCGUCGuCUGGCGa -3' miRNA: 3'- -GCUGCGCG--UCGUCgGUAGC-GGCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 36941 | 0.72 | 0.212264 |
Target: 5'- aCGAacUGCGU-GCAGCCGagGCgGACGCg -3' miRNA: 3'- -GCU--GCGCGuCGUCGGUagCGgCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 33456 | 0.72 | 0.212264 |
Target: 5'- uCGAUcCGCAGUGcuuacacgcGCCGUCgGCCGGCGCu -3' miRNA: 3'- -GCUGcGCGUCGU---------CGGUAG-CGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 11698 | 0.72 | 0.22341 |
Target: 5'- cCGAguuCGCGCuGCAcGUCA-CGCUGACGCu -3' miRNA: 3'- -GCU---GCGCGuCGU-CGGUaGCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 41321 | 0.72 | 0.22341 |
Target: 5'- gGAUGCGCAuGCaAGCU-UCGgCGGCGCg -3' miRNA: 3'- gCUGCGCGU-CG-UCGGuAGCgGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 14180 | 0.72 | 0.228586 |
Target: 5'- uCGGCGagaGCggccccccaaaggGGCGGCCGUCGCUGACc- -3' miRNA: 3'- -GCUGCg--CG-------------UCGUCGGUAGCGGCUGcg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 19010 | 0.72 | 0.229167 |
Target: 5'- uGGCGUGUggucgcugcaGGCGGCgAUCGCCGAgGg -3' miRNA: 3'- gCUGCGCG----------UCGUCGgUAGCGGCUgCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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