miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 15529 0.72 0.229167
Target:  5'- aCGAuCGCGUAGCAGUCGUgcaCGCCaugGACGa -3'
miRNA:   3'- -GCU-GCGCGUCGUCGGUA---GCGG---CUGCg -5'
24920 3' -59.3 NC_005284.1 + 17720 0.72 0.229167
Target:  5'- aCGGCGUuCGGCuGCaCGUCGCaGGCGCa -3'
miRNA:   3'- -GCUGCGcGUCGuCG-GUAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17999 0.72 0.229167
Target:  5'- aGGCGCGC-GCAGUCAagUCGgUCGACGg -3'
miRNA:   3'- gCUGCGCGuCGUCGGU--AGC-GGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 35436 0.72 0.23505
Target:  5'- gGAUGCGuCAGcCAGCCuuguUCGUCG-CGCu -3'
miRNA:   3'- gCUGCGC-GUC-GUCGGu---AGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 31034 0.72 0.241059
Target:  5'- cCGACG-GCGGCcuacauugGGUgAUCGCCGGCGg -3'
miRNA:   3'- -GCUGCgCGUCG--------UCGgUAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 31362 0.72 0.241059
Target:  5'- uGGCGCGCGGaccuguuccGCCugAUCGCCGACa- -3'
miRNA:   3'- gCUGCGCGUCgu-------CGG--UAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 21846 0.71 0.247195
Target:  5'- gCGACGCGCAGCcGCuCAgUGCCaGCGg -3'
miRNA:   3'- -GCUGCGCGUCGuCG-GUaGCGGcUGCg -5'
24920 3' -59.3 NC_005284.1 + 16141 0.71 0.247195
Target:  5'- gGuuuCGCGCAGCcguggGGCaCAUCGCUGAUGg -3'
miRNA:   3'- gCu--GCGCGUCG-----UCG-GUAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 53336 0.71 0.25346
Target:  5'- gGACGCacuGCGGCuGUCGcuUCGCCaGCGCa -3'
miRNA:   3'- gCUGCG---CGUCGuCGGU--AGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31834 0.71 0.265722
Target:  5'- aCGACaagcucuGCGCAGagcGCUAUCGCUGGCuGCg -3'
miRNA:   3'- -GCUG-------CGCGUCgu-CGGUAGCGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 5927 0.71 0.26638
Target:  5'- aCGACGCcgagauGCAgGCGGCaGUUGCgGACGCc -3'
miRNA:   3'- -GCUGCG------CGU-CGUCGgUAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 9794 0.71 0.26638
Target:  5'- aCGGCGCGC-GCcaaCGUCGCCGGCa- -3'
miRNA:   3'- -GCUGCGCGuCGucgGUAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 21885 0.71 0.269028
Target:  5'- uCGACGCaGCGGUuGCggaacgcguuuucggCGUCGCCGGCGa -3'
miRNA:   3'- -GCUGCG-CGUCGuCG---------------GUAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 47262 0.71 0.271027
Target:  5'- aGACGgGCGagaaccucgugaucGaCGGCCGUCGCCG-CGUg -3'
miRNA:   3'- gCUGCgCGU--------------C-GUCGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 54686 0.71 0.273038
Target:  5'- aCGGCGCGCgAGCGGUUG-CGgUGACGUg -3'
miRNA:   3'- -GCUGCGCG-UCGUCGGUaGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 15950 0.7 0.286055
Target:  5'- uCGGCGCGCGacGcCGGCCcacguUCGCCGuguucaacggccgGCGCa -3'
miRNA:   3'- -GCUGCGCGU--C-GUCGGu----AGCGGC-------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 4644 0.7 0.286754
Target:  5'- gCGGCGUgaGCGGCAGCaacUCGCUGGucguCGCg -3'
miRNA:   3'- -GCUGCG--CGUCGUCGgu-AGCGGCU----GCG- -5'
24920 3' -59.3 NC_005284.1 + 10636 0.7 0.286754
Target:  5'- gCGACGaGCGGCGGCgAagCGCUG-CGCg -3'
miRNA:   3'- -GCUGCgCGUCGUCGgUa-GCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 46585 0.7 0.286754
Target:  5'- uGGCgGCGCAGUGGgCAaCGCCGAaCGUc -3'
miRNA:   3'- gCUG-CGCGUCGUCgGUaGCGGCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 9671 0.7 0.286754
Target:  5'- uCGcCGcCGCGGCAGCgCgAUCGCCcuGCGCu -3'
miRNA:   3'- -GCuGC-GCGUCGUCG-G-UAGCGGc-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.