Results 61 - 80 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24920 | 3' | -59.3 | NC_005284.1 | + | 15705 | 0.7 | 0.293812 |
Target: 5'- gGAucUGCauCAGCAGCaCGUCGCCGACcuGCa -3' miRNA: 3'- gCU--GCGc-GUCGUCG-GUAGCGGCUG--CG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 17081 | 0.7 | 0.293812 |
Target: 5'- uGAuCGCGuCGGCGaUCGUCGCCGuguGCGCg -3' miRNA: 3'- gCU-GCGC-GUCGUcGGUAGCGGC---UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 21822 | 0.7 | 0.293812 |
Target: 5'- aCGGCGUGCccGGCGcuuCCAgcgcCGCCGGCGUg -3' miRNA: 3'- -GCUGCGCG--UCGUc--GGUa---GCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 39089 | 0.7 | 0.301006 |
Target: 5'- aCGAUGCGUGGCAacucGCgcaugcguugCGUCGCCaGCGCg -3' miRNA: 3'- -GCUGCGCGUCGU----CG----------GUAGCGGcUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 22626 | 0.7 | 0.306121 |
Target: 5'- uCGAUGCGCAGCAGguucaggcccggcaCCGUaGUCGuCGCc -3' miRNA: 3'- -GCUGCGCGUCGUC--------------GGUAgCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 23279 | 0.7 | 0.308334 |
Target: 5'- aGGCGCGCGGUgccgauaucGGCguguaucccggCGUCGUCGACGg -3' miRNA: 3'- gCUGCGCGUCG---------UCG-----------GUAGCGGCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 48493 | 0.7 | 0.308334 |
Target: 5'- uGGCGCGUcuucGCAGCCAacUUuUCGACGCu -3' miRNA: 3'- gCUGCGCGu---CGUCGGU--AGcGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 31423 | 0.7 | 0.308334 |
Target: 5'- cCGACaGCGCGuguucuGCGcGUCGcUCGCCGACGUu -3' miRNA: 3'- -GCUG-CGCGU------CGU-CGGU-AGCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 23215 | 0.7 | 0.315798 |
Target: 5'- aCGACGgGCGGUggAGCCGU-GUCGAgcaCGCa -3' miRNA: 3'- -GCUGCgCGUCG--UCGGUAgCGGCU---GCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 9561 | 0.7 | 0.315798 |
Target: 5'- aGGCgGCGCAgGCAGCgcUCGCCaaaGCGCa -3' miRNA: 3'- gCUG-CGCGU-CGUCGguAGCGGc--UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 49455 | 0.7 | 0.315798 |
Target: 5'- gCGGCGCGC--CAGCUcgCGCuCGGCGa -3' miRNA: 3'- -GCUGCGCGucGUCGGuaGCG-GCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 43944 | 0.69 | 0.323398 |
Target: 5'- aCGACGCGCGGa--UCAUCaaCGGCGCg -3' miRNA: 3'- -GCUGCGCGUCgucGGUAGcgGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 11250 | 0.69 | 0.323398 |
Target: 5'- uCGACcaaCGCGGCAGCgGcUCGCgCGGCGa -3' miRNA: 3'- -GCUGc--GCGUCGUCGgU-AGCG-GCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 32202 | 0.69 | 0.323398 |
Target: 5'- -cGCGCGCAGCAGCgugCGCCuGgaauggagaauGCGCa -3' miRNA: 3'- gcUGCGCGUCGUCGguaGCGG-C-----------UGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 10163 | 0.69 | 0.323398 |
Target: 5'- aGACcCGCcGCGGUCgcgGUCGCCG-CGCg -3' miRNA: 3'- gCUGcGCGuCGUCGG---UAGCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 49528 | 0.69 | 0.330353 |
Target: 5'- cCGGCGUGaagAGUGGCCggucgagGUCGCCgGAUGCg -3' miRNA: 3'- -GCUGCGCg--UCGUCGG-------UAGCGG-CUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 8950 | 0.69 | 0.331133 |
Target: 5'- gCGAUGCGCAGCAcGUCGUU-CUG-CGCa -3' miRNA: 3'- -GCUGCGCGUCGU-CGGUAGcGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 41596 | 0.69 | 0.331133 |
Target: 5'- aCGuACGCGC-GCgaGGCCG-CGCCGAgUGCg -3' miRNA: 3'- -GC-UGCGCGuCG--UCGGUaGCGGCU-GCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 1223 | 0.69 | 0.33821 |
Target: 5'- gGGCGCGCgccGGCAGCCGcucauguucaucaUCacgacuGCgGGCGCg -3' miRNA: 3'- gCUGCGCG---UCGUCGGU-------------AG------CGgCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 6752 | 0.69 | 0.339003 |
Target: 5'- gGACcCGUAcGcCGGCCGUCGCCaaacccGGCGCg -3' miRNA: 3'- gCUGcGCGU-C-GUCGGUAGCGG------CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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