miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 29863 0.66 0.48238
Target:  5'- cCGACGCaucucGCGaUGGUCggCGCCGGCGUg -3'
miRNA:   3'- -GCUGCG-----CGUcGUCGGuaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16869 0.66 0.48238
Target:  5'- uCGuAUGCGCAGguGCUg--GCCGGUGCg -3'
miRNA:   3'- -GC-UGCGCGUCguCGGuagCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 33949 0.66 0.48238
Target:  5'- gGAaGCGCcGCccGCuCGUCgGCCGGCGCu -3'
miRNA:   3'- gCUgCGCGuCGu-CG-GUAG-CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31983 0.67 0.476466
Target:  5'- aCGACGCGCuGaCGGUCGgcgaaugucaggugaUCaGCCG-CGCa -3'
miRNA:   3'- -GCUGCGCGuC-GUCGGU---------------AG-CGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 16378 0.67 0.472543
Target:  5'- uGACGaGCGGCA-CCGgcUCGCCcuGCGCa -3'
miRNA:   3'- gCUGCgCGUCGUcGGU--AGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 34266 0.67 0.472543
Target:  5'- -uGCGCGC-GCAGCCAguuucagcgUCG-CGAUGUg -3'
miRNA:   3'- gcUGCGCGuCGUCGGU---------AGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 8776 0.67 0.472543
Target:  5'- uCGGCGUGCAuCAGUUgaucgaGUaCGCCGACGa -3'
miRNA:   3'- -GCUGCGCGUcGUCGG------UA-GCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 26554 0.67 0.472543
Target:  5'- gGGCGgGCAGUAG--GUgGCCGGCGa -3'
miRNA:   3'- gCUGCgCGUCGUCggUAgCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 25027 0.67 0.472543
Target:  5'- aGACGCGgAGC-GCaugAUCGgCGACGg -3'
miRNA:   3'- gCUGCGCgUCGuCGg--UAGCgGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 34764 0.67 0.466689
Target:  5'- cCGGCGCGaUguccggauauccaucAGCAGCU-UCGCCGACc- -3'
miRNA:   3'- -GCUGCGC-G---------------UCGUCGGuAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 47962 0.67 0.462808
Target:  5'- cCGACGaGCAGgGGaauugcgauCCGUCGaUCGACGCc -3'
miRNA:   3'- -GCUGCgCGUCgUC---------GGUAGC-GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 26376 0.67 0.462808
Target:  5'- uCGcACGCGCcGCAGUgccuUAUCGaggaCGACGUa -3'
miRNA:   3'- -GC-UGCGCGuCGUCG----GUAGCg---GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 47621 0.67 0.462808
Target:  5'- uCGcACGCGCugaAGCuugcgaAGCUGUCGCCcGACGa -3'
miRNA:   3'- -GC-UGCGCG---UCG------UCGGUAGCGG-CUGCg -5'
24920 3' -59.3 NC_005284.1 + 53881 0.67 0.46184
Target:  5'- gCGGcCGgGaugGGCGGCCGUCGUCGcuugccuuggccuGCGCg -3'
miRNA:   3'- -GCU-GCgCg--UCGUCGGUAGCGGC-------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 30889 0.67 0.457017
Target:  5'- gGuCGCGCAGCgaccgAGCCcagucgggaugcaucGggcgggCGCCGugGCg -3'
miRNA:   3'- gCuGCGCGUCG-----UCGG---------------Ua-----GCGGCugCG- -5'
24920 3' -59.3 NC_005284.1 + 21906 0.67 0.453179
Target:  5'- cCGGCgGCGCuggaagcgccgGGCAcGCCGUCGCCaccGGCuGCc -3'
miRNA:   3'- -GCUG-CGCG-----------UCGU-CGGUAGCGG---CUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 6941 0.67 0.453179
Target:  5'- uCGGCGuCGCAcCGGagaaggCGCCGGCGCc -3'
miRNA:   3'- -GCUGC-GCGUcGUCggua--GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37707 0.67 0.453179
Target:  5'- gGGCGCGCAuacgGGCCGcccCGCCGAaaggcCGCg -3'
miRNA:   3'- gCUGCGCGUcg--UCGGUa--GCGGCU-----GCG- -5'
24920 3' -59.3 NC_005284.1 + 42883 0.67 0.453179
Target:  5'- aCGAUG-GCcGCuGCUAUCacguagaauGCCGGCGCg -3'
miRNA:   3'- -GCUGCgCGuCGuCGGUAG---------CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17795 0.67 0.453179
Target:  5'- gCGACGUGCAGCcgaacGCCGUgaccucCGUCuugauGACGCc -3'
miRNA:   3'- -GCUGCGCGUCGu----CGGUA------GCGG-----CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.