miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 7764 0.67 0.44366
Target:  5'- -cACGCGCAcGCuGUaCGUCGCCGAaaucaGCc -3'
miRNA:   3'- gcUGCGCGU-CGuCG-GUAGCGGCUg----CG- -5'
24920 3' -59.3 NC_005284.1 + 8206 0.68 0.397827
Target:  5'- aCGACGaUGCGGUugugcacggGGCCGaaCGCCGcCGCg -3'
miRNA:   3'- -GCUGC-GCGUCG---------UCGGUa-GCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 8376 0.69 0.355148
Target:  5'- uGAuCGCgGCGGCGGCguuucaGUCGCagGGCGCa -3'
miRNA:   3'- gCU-GCG-CGUCGUCGg-----UAGCGg-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 8668 0.67 0.43332
Target:  5'- aGAcCGCGCaugcGGCGGUCGuauucggucguauUCGCCGuaACGCu -3'
miRNA:   3'- gCU-GCGCG----UCGUCGGU-------------AGCGGC--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 8776 0.67 0.472543
Target:  5'- uCGGCGUGCAuCAGUUgaucgaGUaCGCCGACGa -3'
miRNA:   3'- -GCUGCGCGUcGUCGG------UA-GCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 8917 0.68 0.397827
Target:  5'- uCGACGCGaCAGCcgAGCUGUaucaGCgGAuCGCa -3'
miRNA:   3'- -GCUGCGC-GUCG--UCGGUAg---CGgCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 8950 0.69 0.331133
Target:  5'- gCGAUGCGCAGCAcGUCGUU-CUG-CGCa -3'
miRNA:   3'- -GCUGCGCGUCGU-CGGUAGcGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 9561 0.7 0.315798
Target:  5'- aGGCgGCGCAgGCAGCgcUCGCCaaaGCGCa -3'
miRNA:   3'- gCUG-CGCGU-CGUCGguAGCGGc--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 9671 0.7 0.286754
Target:  5'- uCGcCGcCGCGGCAGCgCgAUCGCCcuGCGCu -3'
miRNA:   3'- -GCuGC-GCGUCGUCG-G-UAGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 9677 0.66 0.532939
Target:  5'- gCGAUGCGCGaaAGCC-UUGC-GAUGCa -3'
miRNA:   3'- -GCUGCGCGUcgUCGGuAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 9750 0.67 0.434254
Target:  5'- cCGAaGCGCgGGCGGUCGagGCgaCGGCGCa -3'
miRNA:   3'- -GCUgCGCG-UCGUCGGUagCG--GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 9794 0.71 0.26638
Target:  5'- aCGGCGCGC-GCcaaCGUCGCCGGCa- -3'
miRNA:   3'- -GCUGCGCGuCGucgGUAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 9846 0.69 0.347008
Target:  5'- gCGACGUG-AGCuugcGCCGUCGCCucGAcCGCc -3'
miRNA:   3'- -GCUGCGCgUCGu---CGGUAGCGG--CU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 9923 0.73 0.201599
Target:  5'- gCGcuCGCGCAGCAGCgG-CGUaCGGCGCu -3'
miRNA:   3'- -GCu-GCGCGUCGUCGgUaGCG-GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 9965 0.66 0.532939
Target:  5'- uCGGCGCGCugAGCuccuGCUGUgcggcUGCCGucuCGCg -3'
miRNA:   3'- -GCUGCGCG--UCGu---CGGUA-----GCGGCu--GCG- -5'
24920 3' -59.3 NC_005284.1 + 10163 0.69 0.323398
Target:  5'- aGACcCGCcGCGGUCgcgGUCGCCG-CGCg -3'
miRNA:   3'- gCUGcGCGuCGUCGG---UAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 10216 0.76 0.112136
Target:  5'- cCGuACGCGCgAGCGccgucugcGCCGUCGCCG-CGCu -3'
miRNA:   3'- -GC-UGCGCG-UCGU--------CGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 10425 0.73 0.181662
Target:  5'- uGACGCGCAGuCGGCaUAUCGgaauuuggCGACGCg -3'
miRNA:   3'- gCUGCGCGUC-GUCG-GUAGCg-------GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 10636 0.7 0.286754
Target:  5'- gCGACGaGCGGCGGCgAagCGCUG-CGCg -3'
miRNA:   3'- -GCUGCgCGUCGUCGgUa-GCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 10736 0.76 0.115239
Target:  5'- gCGGCGCGCAccaguuccucgcGCAGCgCuUCGCCGcCGCu -3'
miRNA:   3'- -GCUGCGCGU------------CGUCG-GuAGCGGCuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.