miRNA display CGI


Results 41 - 60 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 10929 0.73 0.201599
Target:  5'- uGAUGCGCAGgcccgcauggcCGGCCucGUCGCCGGacgaGCg -3'
miRNA:   3'- gCUGCGCGUC-----------GUCGG--UAGCGGCUg---CG- -5'
24920 3' -59.3 NC_005284.1 + 11053 0.69 0.363421
Target:  5'- uGACGCGCG--AGCUcgCGCUGAUGa -3'
miRNA:   3'- gCUGCGCGUcgUCGGuaGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 11247 0.73 0.206872
Target:  5'- -cGCGCGCGGCGGCCG----CGGCGCg -3'
miRNA:   3'- gcUGCGCGUCGUCGGUagcgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 11250 0.69 0.323398
Target:  5'- uCGACcaaCGCGGCAGCgGcUCGCgCGGCGa -3'
miRNA:   3'- -GCUGc--GCGUCGUCGgU-AGCG-GCUGCg -5'
24920 3' -59.3 NC_005284.1 + 11413 0.68 0.392534
Target:  5'- uCGACGCGCAGUugcGCgAUCcgcuGCCGgauguugucgagcauGCGCu -3'
miRNA:   3'- -GCUGCGCGUCGu--CGgUAG----CGGC---------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 11698 0.72 0.22341
Target:  5'- cCGAguuCGCGCuGCAcGUCA-CGCUGACGCu -3'
miRNA:   3'- -GCU---GCGCGuCGU-CGGUaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 11806 0.68 0.389031
Target:  5'- cCGAgGCGgAGCAGgUcgCGCgCGAgCGCg -3'
miRNA:   3'- -GCUgCGCgUCGUCgGuaGCG-GCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 11935 0.67 0.451266
Target:  5'- cCGACGCGcCAGuCGGCCugcaacgcgaGCCGcUGCu -3'
miRNA:   3'- -GCUGCGC-GUC-GUCGGuag-------CGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 12289 0.66 0.502344
Target:  5'- aGugGUGUcGCAGCCGggCGUgcGCGCa -3'
miRNA:   3'- gCugCGCGuCGUCGGUa-GCGgcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 12384 0.66 0.492316
Target:  5'- gCGGgaGCGCGGgAGgaggggauUCGCCGGCGCg -3'
miRNA:   3'- -GCUg-CGCGUCgUCggu-----AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 12755 0.74 0.163491
Target:  5'- gCGGCcCGCuggguGUAGCCGUCGCCGaacugggcuuuGCGCa -3'
miRNA:   3'- -GCUGcGCGu----CGUCGGUAGCGGC-----------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 12833 0.66 0.522661
Target:  5'- uCGAUGauCGCGGCAaCCuUCGCCG-CGUu -3'
miRNA:   3'- -GCUGC--GCGUCGUcGGuAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 14180 0.72 0.228586
Target:  5'- uCGGCGagaGCggccccccaaaggGGCGGCCGUCGCUGACc- -3'
miRNA:   3'- -GCUGCg--CG-------------UCGUCGGUAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 14478 0.68 0.380364
Target:  5'- gGAaGCGCAGCAuGUCggCGCCGAuuuccgUGCa -3'
miRNA:   3'- gCUgCGCGUCGU-CGGuaGCGGCU------GCG- -5'
24920 3' -59.3 NC_005284.1 + 14512 1.11 0.000311
Target:  5'- cCGACGCGCAGCAGCCAUCGCCGACGCu -3'
miRNA:   3'- -GCUGCGCGUCGUCGGUAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 15529 0.72 0.229167
Target:  5'- aCGAuCGCGUAGCAGUCGUgcaCGCCaugGACGa -3'
miRNA:   3'- -GCU-GCGCGUCGUCGGUA---GCGG---CUGCg -5'
24920 3' -59.3 NC_005284.1 + 15705 0.7 0.293812
Target:  5'- gGAucUGCauCAGCAGCaCGUCGCCGACcuGCa -3'
miRNA:   3'- gCU--GCGc-GUCGUCG-GUAGCGGCUG--CG- -5'
24920 3' -59.3 NC_005284.1 + 15950 0.7 0.286055
Target:  5'- uCGGCGCGCGacGcCGGCCcacguUCGCCGuguucaacggccgGCGCa -3'
miRNA:   3'- -GCUGCGCGU--C-GUCGGu----AGCGGC-------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 16141 0.71 0.247195
Target:  5'- gGuuuCGCGCAGCcguggGGCaCAUCGCUGAUGg -3'
miRNA:   3'- gCu--GCGCGUCG-----UCG-GUAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 16178 0.66 0.532939
Target:  5'- uCGGCGCGUcgauggcgcugGGCGG-CAUCGUgcaGAUGCu -3'
miRNA:   3'- -GCUGCGCG-----------UCGUCgGUAGCGg--CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.