miRNA display CGI


Results 61 - 80 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 16378 0.67 0.472543
Target:  5'- uGACGaGCGGCA-CCGgcUCGCCcuGCGCa -3'
miRNA:   3'- gCUGCgCGUCGUcGGU--AGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 16446 0.68 0.380364
Target:  5'- gGugGCgGUGGCAGCagugaAUCGCcCGACaGCc -3'
miRNA:   3'- gCugCG-CGUCGUCGg----UAGCG-GCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 16690 0.68 0.415797
Target:  5'- cCGGCGU-CGGCGuGCCGcugaCGuCCGACGCg -3'
miRNA:   3'- -GCUGCGcGUCGU-CGGUa---GC-GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16753 0.66 0.502344
Target:  5'- uGACuGCGguGCGcgugcGCUucggugUGCCGGCGCu -3'
miRNA:   3'- gCUG-CGCguCGU-----CGGua----GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16779 0.78 0.080545
Target:  5'- aCGGCGCGUcggacgucAGCGGCa--CGCCGACGCc -3'
miRNA:   3'- -GCUGCGCG--------UCGUCGguaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16826 0.66 0.48238
Target:  5'- gCGcACGCGCAccGCAGUCAguugCGUauucuggauuUGGCGCa -3'
miRNA:   3'- -GC-UGCGCGU--CGUCGGUa---GCG----------GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16869 0.66 0.48238
Target:  5'- uCGuAUGCGCAGguGCUg--GCCGGUGCg -3'
miRNA:   3'- -GC-UGCGCGUCguCGGuagCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16991 0.76 0.118421
Target:  5'- cCGaACGCGCAcacgGCGaCgAUCGCCGACGCg -3'
miRNA:   3'- -GC-UGCGCGU----CGUcGgUAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17008 0.74 0.167874
Target:  5'- -uGCGCGCGGCAGC--UCGauCCGAUGCg -3'
miRNA:   3'- gcUGCGCGUCGUCGguAGC--GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17081 0.7 0.293812
Target:  5'- uGAuCGCGuCGGCGaUCGUCGCCGuguGCGCg -3'
miRNA:   3'- gCU-GCGC-GUCGUcGGUAGCGGC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 17720 0.72 0.229167
Target:  5'- aCGGCGUuCGGCuGCaCGUCGCaGGCGCa -3'
miRNA:   3'- -GCUGCGcGUCGuCG-GUAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17795 0.67 0.453179
Target:  5'- gCGACGUGCAGCcgaacGCCGUgaccucCGUCuugauGACGCc -3'
miRNA:   3'- -GCUGCGCGUCGu----CGGUA------GCGG-----CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17840 0.78 0.092518
Target:  5'- gCGACGUcaGCAGCAGCCAgcgcccgaGCCGGUGCg -3'
miRNA:   3'- -GCUGCG--CGUCGUCGGUag------CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 17999 0.72 0.229167
Target:  5'- aGGCGCGC-GCAGUCAagUCGgUCGACGg -3'
miRNA:   3'- gCUGCGCGuCGUCGGU--AGC-GGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 18021 0.74 0.15921
Target:  5'- gCGAuCGC-CGGCGGCgAUUGUCGGCGCc -3'
miRNA:   3'- -GCU-GCGcGUCGUCGgUAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 18229 0.68 0.380364
Target:  5'- uGAuCGUGUAGacgaucuGGCCGUCGUCGuCGCu -3'
miRNA:   3'- gCU-GCGCGUCg------UCGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 18476 0.67 0.424966
Target:  5'- --uCGCGCGGguGCg--CGCCGAgaaCGCg -3'
miRNA:   3'- gcuGCGCGUCguCGguaGCGGCU---GCG- -5'
24920 3' -59.3 NC_005284.1 + 18843 0.68 0.40675
Target:  5'- gGGCGUGCAGgGGCa---GCCGA-GCa -3'
miRNA:   3'- gCUGCGCGUCgUCGguagCGGCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 18992 0.75 0.135594
Target:  5'- -cGCGCGCAGCuccguGCCAagCGCCGACu- -3'
miRNA:   3'- gcUGCGCGUCGu----CGGUa-GCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 19010 0.72 0.229167
Target:  5'- uGGCGUGUggucgcugcaGGCGGCgAUCGCCGAgGg -3'
miRNA:   3'- gCUGCGCG----------UCGUCGgUAGCGGCUgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.