miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 54686 0.71 0.273038
Target:  5'- aCGGCGCGCgAGCGGUUG-CGgUGACGUg -3'
miRNA:   3'- -GCUGCGCG-UCGUCGGUaGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 54535 0.67 0.422202
Target:  5'- gCGcCGCGaCAGCGGCCucuGUCaGCCcuguuugcaagcagGGCGCg -3'
miRNA:   3'- -GCuGCGC-GUCGUCGG---UAG-CGG--------------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 54462 0.69 0.347008
Target:  5'- cCGACGCGguGCgcGGCaAUCGUCauGCGCg -3'
miRNA:   3'- -GCUGCGCguCG--UCGgUAGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 53881 0.67 0.46184
Target:  5'- gCGGcCGgGaugGGCGGCCGUCGUCGcuugccuuggccuGCGCg -3'
miRNA:   3'- -GCU-GCgCg--UCGUCGGUAGCGGC-------------UGCG- -5'
24920 3' -59.3 NC_005284.1 + 53865 0.66 0.512462
Target:  5'- aGAUGCGCucgccGCAGCa---GCCGGCa- -3'
miRNA:   3'- gCUGCGCGu----CGUCGguagCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 53657 0.69 0.363421
Target:  5'- aCGACuGUGCAgGCGGCaacucgaucaaGUCGUCGACGg -3'
miRNA:   3'- -GCUG-CGCGU-CGUCGg----------UAGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 53582 0.66 0.522661
Target:  5'- gGGCGUGCggcuguGGCGGUCAUCGaguucaugCGACuGCa -3'
miRNA:   3'- gCUGCGCG------UCGUCGGUAGCg-------GCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 53336 0.71 0.25346
Target:  5'- gGACGCacuGCGGCuGUCGcuUCGCCaGCGCa -3'
miRNA:   3'- gCUGCG---CGUCGuCGGU--AGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 52700 0.66 0.492316
Target:  5'- aGAucCGUGCGGCGGCaaauUCaGCCcGCGCu -3'
miRNA:   3'- gCU--GCGCGUCGUCGgu--AG-CGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 50120 0.68 0.40675
Target:  5'- gCGAuCGCGCAcGCGGCguUCGCC-AUGg -3'
miRNA:   3'- -GCU-GCGCGU-CGUCGguAGCGGcUGCg -5'
24920 3' -59.3 NC_005284.1 + 49528 0.69 0.330353
Target:  5'- cCGGCGUGaagAGUGGCCggucgagGUCGCCgGAUGCg -3'
miRNA:   3'- -GCUGCGCg--UCGUCGG-------UAGCGG-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 49455 0.7 0.315798
Target:  5'- gCGGCGCGC--CAGCUcgCGCuCGGCGa -3'
miRNA:   3'- -GCUGCGCGucGUCGGuaGCG-GCUGCg -5'
24920 3' -59.3 NC_005284.1 + 49391 0.66 0.522661
Target:  5'- uGGCGCGCcgcacgggcaAGCAGCCGaacuccgaauUCGaCGAaauCGCa -3'
miRNA:   3'- gCUGCGCG----------UCGUCGGU----------AGCgGCU---GCG- -5'
24920 3' -59.3 NC_005284.1 + 49254 0.68 0.371827
Target:  5'- --uCGCGCAGCAuuuccuCCAUCGCCu-CGCc -3'
miRNA:   3'- gcuGCGCGUCGUc-----GGUAGCGGcuGCG- -5'
24920 3' -59.3 NC_005284.1 + 49046 0.75 0.131986
Target:  5'- aGcCGCGCAGCA-CCGcuUCGUCGAUGCa -3'
miRNA:   3'- gCuGCGCGUCGUcGGU--AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 48981 0.67 0.424966
Target:  5'- aGGCgGCGCAGCGacaCCuUCGCCGccggGCGUg -3'
miRNA:   3'- gCUG-CGCGUCGUc--GGuAGCGGC----UGCG- -5'
24920 3' -59.3 NC_005284.1 + 48493 0.7 0.308334
Target:  5'- uGGCGCGUcuucGCAGCCAacUUuUCGACGCu -3'
miRNA:   3'- gCUGCGCGu---CGUCGGU--AGcGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 48456 0.66 0.512462
Target:  5'- aGAUGUGCGu--GCCGUCGUCG-UGCg -3'
miRNA:   3'- gCUGCGCGUcguCGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 48445 0.66 0.512462
Target:  5'- -cGCGUGCAGUgcaguaccAGCU-UCGCCgGAUGCa -3'
miRNA:   3'- gcUGCGCGUCG--------UCGGuAGCGG-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 48205 0.73 0.205277
Target:  5'- --uCGCGCAGCGGCCAcgCGUacgugucugucaugUGGCGCa -3'
miRNA:   3'- gcuGCGCGUCGUCGGUa-GCG--------------GCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.