miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 47962 0.67 0.462808
Target:  5'- cCGACGaGCAGgGGaauugcgauCCGUCGaUCGACGCc -3'
miRNA:   3'- -GCUGCgCGUCgUC---------GGUAGC-GGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 47904 0.68 0.380364
Target:  5'- --uUGCGCgAGCAGUUccCGCCGACGg -3'
miRNA:   3'- gcuGCGCG-UCGUCGGuaGCGGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 47821 0.68 0.380364
Target:  5'- aCGuACGCGC-GCcGCCGUacCGCCGA-GCa -3'
miRNA:   3'- -GC-UGCGCGuCGuCGGUA--GCGGCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 47621 0.67 0.462808
Target:  5'- uCGcACGCGCugaAGCuugcgaAGCUGUCGCCcGACGa -3'
miRNA:   3'- -GC-UGCGCG---UCG------UCGGUAGCGG-CUGCg -5'
24920 3' -59.3 NC_005284.1 + 47262 0.71 0.271027
Target:  5'- aGACGgGCGagaaccucgugaucGaCGGCCGUCGCCG-CGUg -3'
miRNA:   3'- gCUGCgCGU--------------C-GUCGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 46585 0.7 0.286754
Target:  5'- uGGCgGCGCAGUGGgCAaCGCCGAaCGUc -3'
miRNA:   3'- gCUG-CGCGUCGUCgGUaGCGGCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 46531 0.68 0.371827
Target:  5'- gGACGCuCGGCGGCauUCGgCGACGg -3'
miRNA:   3'- gCUGCGcGUCGUCGguAGCgGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 46476 0.67 0.434254
Target:  5'- cCGACGCugGCguuAGCuGCucgugCAUgGCCGACGCc -3'
miRNA:   3'- -GCUGCG--CG---UCGuCG-----GUAgCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 46410 0.66 0.48238
Target:  5'- uCGACGUGUuGCAGUCGggcgUCGCCcaucCGCc -3'
miRNA:   3'- -GCUGCGCGuCGUCGGU----AGCGGcu--GCG- -5'
24920 3' -59.3 NC_005284.1 + 46197 0.66 0.512462
Target:  5'- cCGaACGCGCAGCcucccgAGUCGugggagaacUgGCCGACcGCg -3'
miRNA:   3'- -GC-UGCGCGUCG------UCGGU---------AgCGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 45886 0.66 0.512462
Target:  5'- -uGCGUGCGGaCAccuucGCCGagcaUGCCGACGCc -3'
miRNA:   3'- gcUGCGCGUC-GU-----CGGUa---GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45629 0.66 0.512462
Target:  5'- gCGACGCGCcacgcGGCGGCauagagCGCgGA-GCa -3'
miRNA:   3'- -GCUGCGCG-----UCGUCGgua---GCGgCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 45557 0.68 0.415797
Target:  5'- cCGcCGCGUGGCG--CGUCGCCcGCGCa -3'
miRNA:   3'- -GCuGCGCGUCGUcgGUAGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45287 0.66 0.532939
Target:  5'- gCGGCuGCGCGGCauGGCUgaguaGCCGaAUGCg -3'
miRNA:   3'- -GCUG-CGCGUCG--UCGGuag--CGGC-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 45182 0.67 0.453179
Target:  5'- -aGCGuCGCAGCAGUCAacggCGCuCGGCa- -3'
miRNA:   3'- gcUGC-GCGUCGUCGGUa---GCG-GCUGcg -5'
24920 3' -59.3 NC_005284.1 + 45067 0.66 0.491318
Target:  5'- gGGCGgGCGagcGCGGCUacgcgcucgugaaGUUGCCGAgCGCc -3'
miRNA:   3'- gCUGCgCGU---CGUCGG-------------UAGCGGCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 43944 0.69 0.323398
Target:  5'- aCGACGCGCGGa--UCAUCaaCGGCGCg -3'
miRNA:   3'- -GCUGCGCGUCgucGGUAGcgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 42883 0.67 0.453179
Target:  5'- aCGAUG-GCcGCuGCUAUCacguagaauGCCGGCGCg -3'
miRNA:   3'- -GCUGCgCGuCGuCGGUAG---------CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 41596 0.69 0.331133
Target:  5'- aCGuACGCGC-GCgaGGCCG-CGCCGAgUGCg -3'
miRNA:   3'- -GC-UGCGCGuCG--UCGGUaGCGGCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 41321 0.72 0.22341
Target:  5'- gGAUGCGCAuGCaAGCU-UCGgCGGCGCg -3'
miRNA:   3'- gCUGCGCGU-CG-UCGGuAGCgGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.