miRNA display CGI


Results 41 - 60 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 39998 0.66 0.532939
Target:  5'- uCGAaaaCGCAGCAGCCGaccUCGaaGucaGCGCa -3'
miRNA:   3'- -GCUgc-GCGUCGUCGGU---AGCggC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 39463 0.68 0.395175
Target:  5'- gGGUGCGguGCuguGCCAUCGUCuuucuccuguagcgGGCGCg -3'
miRNA:   3'- gCUGCGCguCGu--CGGUAGCGG--------------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 39089 0.7 0.301006
Target:  5'- aCGAUGCGUGGCAacucGCgcaugcguugCGUCGCCaGCGCg -3'
miRNA:   3'- -GCUGCGCGUCGU----CG----------GUAGCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 38800 0.68 0.40675
Target:  5'- cCGGCGC-CAuGCAGCgCAUUgaGCCGGCaGCc -3'
miRNA:   3'- -GCUGCGcGU-CGUCG-GUAG--CGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 37879 0.68 0.397827
Target:  5'- gGGCGCGUGGCGGauuUGUgGCCaACGCa -3'
miRNA:   3'- gCUGCGCGUCGUCg--GUAgCGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37707 0.67 0.453179
Target:  5'- gGGCGCGCAuacgGGCCGcccCGCCGAaaggcCGCg -3'
miRNA:   3'- gCUGCGCGUcg--UCGGUa--GCGGCU-----GCG- -5'
24920 3' -59.3 NC_005284.1 + 37434 0.74 0.15921
Target:  5'- gGACGUuaucGCAGcCGGCCGcgaggaacaUCGUCGGCGCg -3'
miRNA:   3'- gCUGCG----CGUC-GUCGGU---------AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37373 0.73 0.191403
Target:  5'- uCGACGUugacGCcGCGGUCGUCGCCGuaGCGUu -3'
miRNA:   3'- -GCUGCG----CGuCGUCGGUAGCGGC--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 37179 0.69 0.363421
Target:  5'- gCGAuCGUGC-GCGacGCCcugaaucUCGCCGGCGCg -3'
miRNA:   3'- -GCU-GCGCGuCGU--CGGu------AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37086 0.66 0.512462
Target:  5'- uCGACGCGcCGGCgagauucaGGgCGUCGCgcaCGAuCGCg -3'
miRNA:   3'- -GCUGCGC-GUCG--------UCgGUAGCG---GCU-GCG- -5'
24920 3' -59.3 NC_005284.1 + 37031 0.66 0.492316
Target:  5'- uCGACGCGCuGCuguaguGCCGccUUGCCccugccguaGACGUc -3'
miRNA:   3'- -GCUGCGCGuCGu-----CGGU--AGCGG---------CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 36941 0.72 0.212264
Target:  5'- aCGAacUGCGU-GCAGCCGagGCgGACGCg -3'
miRNA:   3'- -GCU--GCGCGuCGUCGGUagCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 35589 0.68 0.371827
Target:  5'- uCGuCGCGCugcggagacucaGGCAGCCugucgacagCGCCGACa- -3'
miRNA:   3'- -GCuGCGCG------------UCGUCGGua-------GCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 35436 0.72 0.23505
Target:  5'- gGAUGCGuCAGcCAGCCuuguUCGUCG-CGCu -3'
miRNA:   3'- gCUGCGC-GUC-GUCGGu---AGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 34764 0.67 0.466689
Target:  5'- cCGGCGCGaUguccggauauccaucAGCAGCU-UCGCCGACc- -3'
miRNA:   3'- -GCUGCGC-G---------------UCGUCGGuAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 34371 0.66 0.522661
Target:  5'- uGAUGCGCuGacggacgAGCaCAUCGC-GACGCu -3'
miRNA:   3'- gCUGCGCGuCg------UCG-GUAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 34327 0.69 0.346202
Target:  5'- -cGCGCGCAGUuacGCCGcaggacaUCGaCGGCGCa -3'
miRNA:   3'- gcUGCGCGUCGu--CGGU-------AGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 34266 0.67 0.472543
Target:  5'- -uGCGCGC-GCAGCCAguuucagcgUCG-CGAUGUg -3'
miRNA:   3'- gcUGCGCGuCGUCGGU---------AGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 34084 0.68 0.380364
Target:  5'- uCGaACGCGCAGaauCGGCCcUCGCCGcACc- -3'
miRNA:   3'- -GC-UGCGCGUC---GUCGGuAGCGGC-UGcg -5'
24920 3' -59.3 NC_005284.1 + 33949 0.66 0.48238
Target:  5'- gGAaGCGCcGCccGCuCGUCgGCCGGCGCu -3'
miRNA:   3'- gCUgCGCGuCGu-CG-GUAG-CGGCUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.