miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 19010 0.72 0.229167
Target:  5'- uGGCGUGUggucgcugcaGGCGGCgAUCGCCGAgGg -3'
miRNA:   3'- gCUGCGCG----------UCGUCGgUAGCGGCUgCg -5'
24920 3' -59.3 NC_005284.1 + 17999 0.72 0.229167
Target:  5'- aGGCGCGC-GCAGUCAagUCGgUCGACGg -3'
miRNA:   3'- gCUGCGCGuCGUCGGU--AGC-GGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 25517 0.74 0.163491
Target:  5'- gGugGaauCGgAGCGGCCGUCGUCGuGCGCg -3'
miRNA:   3'- gCugC---GCgUCGUCGGUAGCGGC-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 37434 0.74 0.15921
Target:  5'- gGACGUuaucGCAGcCGGCCGcgaggaacaUCGUCGGCGCg -3'
miRNA:   3'- gCUGCG----CGUC-GUCGGU---------AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 31205 0.75 0.146971
Target:  5'- cCGAucuCGCGUAGCAucGCCgcgacGUUGCCGAUGCg -3'
miRNA:   3'- -GCU---GCGCGUCGU--CGG-----UAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 30665 0.75 0.142702
Target:  5'- gCGGC-CGUcgAGCAGCCGgccggcggcuuucUUGCCGACGCg -3'
miRNA:   3'- -GCUGcGCG--UCGUCGGU-------------AGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 26345 0.76 0.121685
Target:  5'- ---aGCGCGGCacGGUCAaCGCCGGCGCg -3'
miRNA:   3'- gcugCGCGUCG--UCGGUaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16991 0.76 0.118421
Target:  5'- cCGaACGCGCAcacgGCGaCgAUCGCCGACGCg -3'
miRNA:   3'- -GC-UGCGCGU----CGUcGgUAGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 21636 0.79 0.078335
Target:  5'- uCGACGCcgaGCAGCGuGCgAUCGCCG-CGCa -3'
miRNA:   3'- -GCUGCG---CGUCGU-CGgUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 21585 0.81 0.054411
Target:  5'- uCGACGCGCAGCGGCa--UGCCGAaGCg -3'
miRNA:   3'- -GCUGCGCGUCGUCGguaGCGGCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 10425 0.73 0.181662
Target:  5'- uGACGCGCAGuCGGCaUAUCGgaauuuggCGACGCg -3'
miRNA:   3'- gCUGCGCGUC-GUCG-GUAGCg-------GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 37373 0.73 0.191403
Target:  5'- uCGACGUugacGCcGCGGUCGUCGCCGuaGCGUu -3'
miRNA:   3'- -GCUGCG----CGuCGUCGGUAGCGGC--UGCG- -5'
24920 3' -59.3 NC_005284.1 + 14180 0.72 0.228586
Target:  5'- uCGGCGagaGCggccccccaaaggGGCGGCCGUCGCUGACc- -3'
miRNA:   3'- -GCUGCg--CG-------------UCGUCGGUAGCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 41321 0.72 0.22341
Target:  5'- gGAUGCGCAuGCaAGCU-UCGgCGGCGCg -3'
miRNA:   3'- gCUGCGCGU-CG-UCGGuAGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 33456 0.72 0.212264
Target:  5'- uCGAUcCGCAGUGcuuacacgcGCCGUCgGCCGGCGCu -3'
miRNA:   3'- -GCUGcGCGUCGU---------CGGUAG-CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 26931 0.73 0.206872
Target:  5'- gCGAUGCGCcgGGCGGgCGUCGuCUGGCGa -3'
miRNA:   3'- -GCUGCGCG--UCGUCgGUAGC-GGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 31344 0.73 0.205808
Target:  5'- gCGACGCGCagaacacgcgcugucGGUGGCCGUggauugcauagaacgCGCCGuCGCg -3'
miRNA:   3'- -GCUGCGCG---------------UCGUCGGUA---------------GCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 48205 0.73 0.205277
Target:  5'- --uCGCGCAGCGGCCAcgCGUacgugucugucaugUGGCGCa -3'
miRNA:   3'- gcuGCGCGUCGUCGGUa-GCG--------------GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 10929 0.73 0.201599
Target:  5'- uGAUGCGCAGgcccgcauggcCGGCCucGUCGCCGGacgaGCg -3'
miRNA:   3'- gCUGCGCGUC-----------GUCGG--UAGCGGCUg---CG- -5'
24920 3' -59.3 NC_005284.1 + 9923 0.73 0.201599
Target:  5'- gCGcuCGCGCAGCAGCgG-CGUaCGGCGCu -3'
miRNA:   3'- -GCu-GCGCGUCGUCGgUaGCG-GCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.