Results 41 - 60 of 201 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24920 | 3' | -59.3 | NC_005284.1 | + | 30665 | 0.75 | 0.142702 |
Target: 5'- gCGGC-CGUcgAGCAGCCGgccggcggcuuucUUGCCGACGCg -3' miRNA: 3'- -GCUGcGCG--UCGUCGGU-------------AGCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 26345 | 0.76 | 0.121685 |
Target: 5'- ---aGCGCGGCacGGUCAaCGCCGGCGCg -3' miRNA: 3'- gcugCGCGUCG--UCGGUaGCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 16991 | 0.76 | 0.118421 |
Target: 5'- cCGaACGCGCAcacgGCGaCgAUCGCCGACGCg -3' miRNA: 3'- -GC-UGCGCGU----CGUcGgUAGCGGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 21636 | 0.79 | 0.078335 |
Target: 5'- uCGACGCcgaGCAGCGuGCgAUCGCCG-CGCa -3' miRNA: 3'- -GCUGCG---CGUCGU-CGgUAGCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 21585 | 0.81 | 0.054411 |
Target: 5'- uCGACGCGCAGCGGCa--UGCCGAaGCg -3' miRNA: 3'- -GCUGCGCGUCGUCGguaGCGGCUgCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 31344 | 0.73 | 0.205808 |
Target: 5'- gCGACGCGCagaacacgcgcugucGGUGGCCGUggauugcauagaacgCGCCGuCGCg -3' miRNA: 3'- -GCUGCGCG---------------UCGUCGGUA---------------GCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 26931 | 0.73 | 0.206872 |
Target: 5'- gCGAUGCGCcgGGCGGgCGUCGuCUGGCGa -3' miRNA: 3'- -GCUGCGCG--UCGUCgGUAGC-GGCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 47262 | 0.71 | 0.271027 |
Target: 5'- aGACGgGCGagaaccucgugaucGaCGGCCGUCGCCG-CGUg -3' miRNA: 3'- gCUGCgCGU--------------C-GUCGGUAGCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 21885 | 0.71 | 0.269028 |
Target: 5'- uCGACGCaGCGGUuGCggaacgcguuuucggCGUCGCCGGCGa -3' miRNA: 3'- -GCUGCG-CGUCGuCG---------------GUAGCGGCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 9794 | 0.71 | 0.26638 |
Target: 5'- aCGGCGCGC-GCcaaCGUCGCCGGCa- -3' miRNA: 3'- -GCUGCGCGuCGucgGUAGCGGCUGcg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 5927 | 0.71 | 0.26638 |
Target: 5'- aCGACGCcgagauGCAgGCGGCaGUUGCgGACGCc -3' miRNA: 3'- -GCUGCG------CGU-CGUCGgUAGCGgCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 53336 | 0.71 | 0.25346 |
Target: 5'- gGACGCacuGCGGCuGUCGcuUCGCCaGCGCa -3' miRNA: 3'- gCUGCG---CGUCGuCGGU--AGCGGcUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 16141 | 0.71 | 0.247195 |
Target: 5'- gGuuuCGCGCAGCcguggGGCaCAUCGCUGAUGg -3' miRNA: 3'- gCu--GCGCGUCG-----UCG-GUAGCGGCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 35436 | 0.72 | 0.23505 |
Target: 5'- gGAUGCGuCAGcCAGCCuuguUCGUCG-CGCu -3' miRNA: 3'- gCUGCGC-GUC-GUCGGu---AGCGGCuGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 17720 | 0.72 | 0.229167 |
Target: 5'- aCGGCGUuCGGCuGCaCGUCGCaGGCGCa -3' miRNA: 3'- -GCUGCGcGUCGuCG-GUAGCGgCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 19010 | 0.72 | 0.229167 |
Target: 5'- uGGCGUGUggucgcugcaGGCGGCgAUCGCCGAgGg -3' miRNA: 3'- gCUGCGCG----------UCGUCGgUAGCGGCUgCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 17999 | 0.72 | 0.229167 |
Target: 5'- aGGCGCGC-GCAGUCAagUCGgUCGACGg -3' miRNA: 3'- gCUGCGCGuCGUCGGU--AGC-GGCUGCg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 14180 | 0.72 | 0.228586 |
Target: 5'- uCGGCGagaGCggccccccaaaggGGCGGCCGUCGCUGACc- -3' miRNA: 3'- -GCUGCg--CG-------------UCGUCGGUAGCGGCUGcg -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 41321 | 0.72 | 0.22341 |
Target: 5'- gGAUGCGCAuGCaAGCU-UCGgCGGCGCg -3' miRNA: 3'- gCUGCGCGU-CG-UCGGuAGCgGCUGCG- -5' |
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24920 | 3' | -59.3 | NC_005284.1 | + | 33456 | 0.72 | 0.212264 |
Target: 5'- uCGAUcCGCAGUGcuuacacgcGCCGUCgGCCGGCGCu -3' miRNA: 3'- -GCUGcGCGUCGU---------CGGUAG-CGGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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