miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 9965 0.66 0.532939
Target:  5'- uCGGCGCGCugAGCuccuGCUGUgcggcUGCCGucuCGCg -3'
miRNA:   3'- -GCUGCGCG--UCGu---CGGUA-----GCGGCu--GCG- -5'
24920 3' -59.3 NC_005284.1 + 16378 0.67 0.472543
Target:  5'- uGACGaGCGGCA-CCGgcUCGCCcuGCGCa -3'
miRNA:   3'- gCUGCgCGUCGUcGGU--AGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 26376 0.67 0.462808
Target:  5'- uCGcACGCGCcGCAGUgccuUAUCGaggaCGACGUa -3'
miRNA:   3'- -GC-UGCGCGuCGUCG----GUAGCg---GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16779 0.78 0.080545
Target:  5'- aCGGCGCGUcggacgucAGCGGCa--CGCCGACGCc -3'
miRNA:   3'- -GCUGCGCG--------UCGUCGguaGCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 12833 0.66 0.522661
Target:  5'- uCGAUGauCGCGGCAaCCuUCGCCG-CGUu -3'
miRNA:   3'- -GCUGC--GCGUCGUcGGuAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 34371 0.66 0.522661
Target:  5'- uGAUGCGCuGacggacgAGCaCAUCGC-GACGCu -3'
miRNA:   3'- gCUGCGCGuCg------UCG-GUAGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 23393 0.66 0.522661
Target:  5'- uGAUGCaacGCAGUu-CCGUCGaCGACGCc -3'
miRNA:   3'- gCUGCG---CGUCGucGGUAGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45886 0.66 0.512462
Target:  5'- -uGCGUGCGGaCAccuucGCCGagcaUGCCGACGCc -3'
miRNA:   3'- gcUGCGCGUC-GU-----CGGUa---GCGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 53865 0.66 0.512462
Target:  5'- aGAUGCGCucgccGCAGCa---GCCGGCa- -3'
miRNA:   3'- gCUGCGCGu----CGUCGguagCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 31983 0.67 0.476466
Target:  5'- aCGACGCGCuGaCGGUCGgcgaaugucaggugaUCaGCCG-CGCa -3'
miRNA:   3'- -GCUGCGCGuC-GUCGGU---------------AG-CGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 52700 0.66 0.492316
Target:  5'- aGAucCGUGCGGCGGCaaauUCaGCCcGCGCu -3'
miRNA:   3'- gCU--GCGCGUCGUCGgu--AG-CGGcUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45629 0.66 0.512462
Target:  5'- gCGACGCGCcacgcGGCGGCauagagCGCgGA-GCa -3'
miRNA:   3'- -GCUGCGCG-----UCGUCGgua---GCGgCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 27584 0.66 0.532939
Target:  5'- uCGACGCGCc-CAucgaucaucGCCAcCGUgGGCGCa -3'
miRNA:   3'- -GCUGCGCGucGU---------CGGUaGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 16826 0.66 0.48238
Target:  5'- gCGcACGCGCAccGCAGUCAguugCGUauucuggauuUGGCGCa -3'
miRNA:   3'- -GC-UGCGCGU--CGUCGGUa---GCG----------GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 39998 0.66 0.532939
Target:  5'- uCGAaaaCGCAGCAGCCGaccUCGaaGucaGCGCa -3'
miRNA:   3'- -GCUgc-GCGUCGUCGGU---AGCggC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 48456 0.66 0.512462
Target:  5'- aGAUGUGCGu--GCCGUCGUCG-UGCg -3'
miRNA:   3'- gCUGCGCGUcguCGGUAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 46410 0.66 0.48238
Target:  5'- uCGACGUGUuGCAGUCGggcgUCGCCcaucCGCc -3'
miRNA:   3'- -GCUGCGCGuCGUCGGU----AGCGGcu--GCG- -5'
24920 3' -59.3 NC_005284.1 + 25027 0.67 0.472543
Target:  5'- aGACGCGgAGC-GCaugAUCGgCGACGg -3'
miRNA:   3'- gCUGCGCgUCGuCGg--UAGCgGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 21642 0.66 0.522661
Target:  5'- uCGAacgccCGCGCGGCcuGCuCGUCggcaaGCCGAUGUg -3'
miRNA:   3'- -GCU-----GCGCGUCGu-CG-GUAG-----CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 21012 0.66 0.522661
Target:  5'- aGGCGUGCAGCgAGCUcgAUCuGCucuCGACGa -3'
miRNA:   3'- gCUGCGCGUCG-UCGG--UAG-CG---GCUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.