miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 3' -59.3 NC_005284.1 + 17795 0.67 0.453179
Target:  5'- gCGACGUGCAGCcgaacGCCGUgaccucCGUCuugauGACGCc -3'
miRNA:   3'- -GCUGCGCGUCGu----CGGUA------GCGG-----CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 26376 0.67 0.462808
Target:  5'- uCGcACGCGCcGCAGUgccuUAUCGaggaCGACGUa -3'
miRNA:   3'- -GC-UGCGCGuCGUCG----GUAGCg---GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 45629 0.66 0.512462
Target:  5'- gCGACGCGCcacgcGGCGGCauagagCGCgGA-GCa -3'
miRNA:   3'- -GCUGCGCG-----UCGUCGgua---GCGgCUgCG- -5'
24920 3' -59.3 NC_005284.1 + 21642 0.66 0.522661
Target:  5'- uCGAacgccCGCGCGGCcuGCuCGUCggcaaGCCGAUGUg -3'
miRNA:   3'- -GCU-----GCGCGUCGu-CG-GUAG-----CGGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 38800 0.68 0.40675
Target:  5'- cCGGCGC-CAuGCAGCgCAUUgaGCCGGCaGCc -3'
miRNA:   3'- -GCUGCGcGU-CGUCG-GUAG--CGGCUG-CG- -5'
24920 3' -59.3 NC_005284.1 + 7764 0.67 0.44366
Target:  5'- -cACGCGCAcGCuGUaCGUCGCCGAaaucaGCc -3'
miRNA:   3'- gcUGCGCGU-CGuCG-GUAGCGGCUg----CG- -5'
24920 3' -59.3 NC_005284.1 + 16378 0.67 0.472543
Target:  5'- uGACGaGCGGCA-CCGgcUCGCCcuGCGCa -3'
miRNA:   3'- gCUGCgCGUCGUcGGU--AGCGGc-UGCG- -5'
24920 3' -59.3 NC_005284.1 + 39998 0.66 0.532939
Target:  5'- uCGAaaaCGCAGCAGCCGaccUCGaaGucaGCGCa -3'
miRNA:   3'- -GCUgc-GCGUCGUCGGU---AGCggC---UGCG- -5'
24920 3' -59.3 NC_005284.1 + 11935 0.67 0.451266
Target:  5'- cCGACGCGcCAGuCGGCCugcaacgcgaGCCGcUGCu -3'
miRNA:   3'- -GCUGCGC-GUC-GUCGGuag-------CGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 27584 0.66 0.532939
Target:  5'- uCGACGCGCc-CAucgaucaucGCCAcCGUgGGCGCa -3'
miRNA:   3'- -GCUGCGCGucGU---------CGGUaGCGgCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 25027 0.67 0.472543
Target:  5'- aGACGCGgAGC-GCaugAUCGgCGACGg -3'
miRNA:   3'- gCUGCGCgUCGuCGg--UAGCgGCUGCg -5'
24920 3' -59.3 NC_005284.1 + 23435 0.67 0.453179
Target:  5'- uCG-UGCGUAG-GGCCAaCGCCGcCGCu -3'
miRNA:   3'- -GCuGCGCGUCgUCGGUaGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 16826 0.66 0.48238
Target:  5'- gCGcACGCGCAccGCAGUCAguugCGUauucuggauuUGGCGCa -3'
miRNA:   3'- -GC-UGCGCGU--CGUCGGUa---GCG----------GCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 53865 0.66 0.512462
Target:  5'- aGAUGCGCucgccGCAGCa---GCCGGCa- -3'
miRNA:   3'- gCUGCGCGu----CGUCGguagCGGCUGcg -5'
24920 3' -59.3 NC_005284.1 + 23393 0.66 0.522661
Target:  5'- uGAUGCaacGCAGUu-CCGUCGaCGACGCc -3'
miRNA:   3'- gCUGCG---CGUCGucGGUAGCgGCUGCG- -5'
24920 3' -59.3 NC_005284.1 + 12833 0.66 0.522661
Target:  5'- uCGAUGauCGCGGCAaCCuUCGCCG-CGUu -3'
miRNA:   3'- -GCUGC--GCGUCGUcGGuAGCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 3564 0.68 0.397827
Target:  5'- aGGCGUccuGC-GCAGCCGUaGCCGuCGUg -3'
miRNA:   3'- gCUGCG---CGuCGUCGGUAgCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 8206 0.68 0.397827
Target:  5'- aCGACGaUGCGGUugugcacggGGCCGaaCGCCGcCGCg -3'
miRNA:   3'- -GCUGC-GCGUCG---------UCGGUa-GCGGCuGCG- -5'
24920 3' -59.3 NC_005284.1 + 31742 0.68 0.415797
Target:  5'- uGGCGCaGCGGCaaugAGCCGcUGCCaGAUGUa -3'
miRNA:   3'- gCUGCG-CGUCG----UCGGUaGCGG-CUGCG- -5'
24920 3' -59.3 NC_005284.1 + 8668 0.67 0.43332
Target:  5'- aGAcCGCGCaugcGGCGGUCGuauucggucguauUCGCCGuaACGCu -3'
miRNA:   3'- gCU-GCGCG----UCGUCGGU-------------AGCGGC--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.