miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 12410 0.66 0.982312
Target:  5'- cCGGCGcgCAACGGcGgGAUcUCGGUcaGCg -3'
miRNA:   3'- -GCUGUa-GUUGCCuUgCUAaAGCCG--CG- -5'
24920 5' -48.7 NC_005284.1 + 18331 0.66 0.982312
Target:  5'- gCGGCGgcugCAccgaugGCGGAACGAUcgugaUCGGcCGUu -3'
miRNA:   3'- -GCUGUa---GU------UGCCUUGCUAa----AGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 19533 0.66 0.982312
Target:  5'- -uACAUC-GCGGGGCGGcagggUUGGCGg -3'
miRNA:   3'- gcUGUAGuUGCCUUGCUaa---AGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 22241 0.66 0.982312
Target:  5'- -uACGUCGagguguucGCGG-GCGGgg-CGGCGCu -3'
miRNA:   3'- gcUGUAGU--------UGCCuUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 4587 0.66 0.980003
Target:  5'- uGACcgaggGUCuuCGGcguuuCGAgUUCGGCGCu -3'
miRNA:   3'- gCUG-----UAGuuGCCuu---GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49101 0.66 0.980003
Target:  5'- uCGGCAUCGagcagcGCGaGGGCGAagugUUCaugcguuuuaaGGCGCg -3'
miRNA:   3'- -GCUGUAGU------UGC-CUUGCUa---AAG-----------CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45434 0.66 0.980003
Target:  5'- aCGAUAUUcGCGGcgucGCGAUUgUCGG-GCg -3'
miRNA:   3'- -GCUGUAGuUGCCu---UGCUAA-AGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 21315 0.66 0.980003
Target:  5'- aGGCGguUCAAUGcGGGCGAcuggCGGgGCg -3'
miRNA:   3'- gCUGU--AGUUGC-CUUGCUaaa-GCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 13619 0.66 0.980003
Target:  5'- gCGACgGUCGACGGAAaauaccUCGGCu- -3'
miRNA:   3'- -GCUG-UAGUUGCCUUgcuaa-AGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 19789 0.66 0.980003
Target:  5'- gGGCAUgGACGGcAGCGcgg-CGGCa- -3'
miRNA:   3'- gCUGUAgUUGCC-UUGCuaaaGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 35724 0.66 0.978515
Target:  5'- aCGGCAUCGugaaccugacgcaguACGcauuCGAgcuugUCGGCGCu -3'
miRNA:   3'- -GCUGUAGU---------------UGCcuu-GCUaa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 53020 0.66 0.977477
Target:  5'- -uGCGUCGA-GGAAagccauCGGcUUCGGCGCc -3'
miRNA:   3'- gcUGUAGUUgCCUU------GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10093 0.66 0.975574
Target:  5'- gCGACcgCGGCGGGucugaagacgGCGAccgaaagcgcggcgaCGGCGCa -3'
miRNA:   3'- -GCUGuaGUUGCCU----------UGCUaaa------------GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 29914 0.66 0.974724
Target:  5'- uGAcCGUCGACGGuugcccauGCaGUUcagugcacUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCCu-------UGcUAA--------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 43935 0.66 0.974724
Target:  5'- gGAuCAUCAACGGcgcgcucaacaaAugGAcaagcUUcgaUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCC------------UugCU-----AA---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 6941 0.66 0.974724
Target:  5'- uCGGCGUCGcacCGGAgaagGCGc---CGGCGCc -3'
miRNA:   3'- -GCUGUAGUu--GCCU----UGCuaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49637 0.66 0.974724
Target:  5'- -cGCGUCAGCGGcguuccGACGGUUcgaUCGaGCGa -3'
miRNA:   3'- gcUGUAGUUGCC------UUGCUAA---AGC-CGCg -5'
24920 5' -48.7 NC_005284.1 + 49508 0.66 0.974724
Target:  5'- uCGAgGUCGcCGGAuGCGAUUUCGuCGa -3'
miRNA:   3'- -GCUgUAGUuGCCU-UGCUAAAGCcGCg -5'
24920 5' -48.7 NC_005284.1 + 13354 0.66 0.974724
Target:  5'- gGuuGUCGGCGGcaagcuGACGGUgggCGGCGa -3'
miRNA:   3'- gCugUAGUUGCC------UUGCUAaa-GCCGCg -5'
24920 5' -48.7 NC_005284.1 + 48889 0.66 0.974724
Target:  5'- -cGCGUCGACGGGAaccagUCGG-GCa -3'
miRNA:   3'- gcUGUAGUUGCCUUgcuaaAGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.